KEGG T00920: TGAM

Thermococcus gammatolerans: TGAM_1718

Entry

TGAM_1718 CDS T00920

Gene name

lig

Definition

ATP-dependent DNA ligase (EC:6.5.1.1)

Orthology

K10747

DNA ligase 1 [EC:6.5.1.1]

Organism

tga Thermococcus gammatolerans

Pathway

tga03030	DNA replication
tga03410	Base excision repair
tga03420	Nucleotide excision repair
tga03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; DNA replication [PATH:tga03030]
Genetic Information Processing; Replication and repair; Base excision repair [PATH:tga03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:tga03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:tga03430]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DNA_ligase_OB_2 TPR_1 mRNA_cap_enzyme Peptidase_S7 UCR_UQCRX_QCR9 Corona_NS1

Other DBs

NCBI-GI:

240103775

NCBI-GeneID:

7987437

UniProt:

C5A7K8

Position

1623263..1624942

AA seq 559 aa
MRYSELAELYRRLEKTTLKTLKTKFVADFLKKTPDDLLEIVPYLILGKVFPDWDERELGV
GEKLLIKAVSMATGVPEKEIENSIKDTGDLGESVALALKKRRQKSFFSQPLTIKRVYNTF
VKVAEASGEGSQDRKMKYLANLFMDAGPEEGKYIARTVLGTMRTGVAEGILRDAIAEAFK
VKVELVERAYMLTSDFGYVAKIAKLEGNEGLSKVSIQIGKPIRPMLAQNAASVKDALIEM
GGEAAFEIKYDGARVQVHRDGDKVIIYSRRLENVTRSIPEIVEAVKASLKPSKVIVEGEL
VAVGENGRPRPFQYVLRRFRRKYNIEEMIEKIPLELNLFDILYVNGESLIDTKFTERRKR
LEESVEESDKIKLAEQLVTKKVDEAEEFYKRALELGHEGLMAKRLDAIYEPGNRGKKWLK
IKPTMENLDLVIIGAEWGEGRRAHLLGSFLVGAYDPESGEFVPVGKVGSGFTDEDLVEFT
KMLKPLIIREEGKFVEIEPKVVIEVTYQEIQKSPKYKSGFALRFPRYVALREDKSPEEAD
TIERVAQLYELQERFKAKR

NT seq 1680 nt +upstreamnt +downstreamnt
atgaggtactccgagttagccgaactttacaggaggcttgagaagaccacgctcaaaacg
ctcaagacgaagtttgtggcggacttcctcaagaaaacgcccgacgatttgctcgagata
gtgccctacctgattctcggcaaggtcttcccagactgggacgagcgcgagctcggcgtc
ggagaaaaactcctgataaaggccgtttcgatggcaacgggtgtccccgagaaggaaatc
gagaactcgattaaagataccggcgacttgggcgagagcgtggctttagccctcaagaag
agaaggcagaagagcttcttcagccagcccctcacgataaagcgcgtctacaacaccttc
gttaaggttgccgaggcgagcggagaggggagccaggacaggaagatgaaatatctggcc
aatctcttcatggacgccgggcctgaggagggaaagtacatagcgaggacagtcctcgga
actatgaggaccggggttgccgagggaatcctgcgcgatgccatagccgaggcctttaag
gtaaaggttgagcttgttgagagagcttatatgctaacgagcgacttcggctacgtggcg
aagatagcgaagcttgaagggaacgaggggctctcgaaggtgagcatacagatcgggaag
ccgataaggcccatgttggcacaaaacgccgcgagcgttaaggacgcactcattgagatg
ggcggtgaagccgccttcgagataaagtacgacggagcgagggttcaggtccaccgcgac
ggggataaggtgataatctactcgaggaggcttgagaacgtcacccgctcgattccagag
atagtcgaggcggtaaaggcctcgctgaagccttctaaggtcatagtagagggtgagctg
gttgccgttggcgagaacggtcgtccgagacccttccagtacgtcctgaggaggttcagg
aggaagtacaacatcgaggagatgattgagaagatcccgctcgagctcaacctctttgat
attctctacgtcaacggcgaaagtctcatcgacacgaagttcaccgagaggcggaagagg
ctcgaggagagcgtcgaggagagcgataagataaagctcgccgaacagctcgttacgaag
aaggtcgacgaagccgaggagttctacaagagggccctggagcttggccacgaggggctc
atggcaaagaggcttgacgcgatctacgagcccggaaatcgcggaaagaaatggctcaag
atcaagcccacgatggagaacctcgatttggtcatcatcggcgccgagtggggcgaggga
aggcgcgcacacctgctcggttccttcctcgtcggtgcgtacgacccggagagcggtgag
ttcgtcccggttgggaaggtcgggagcggtttcaccgacgaggatctggtagagttcacc
aagatgctcaagcccctcatcatccgcgaggagggcaagttcgtcgagattgagccaaag
gtggtcatagaggttacctaccaggagatacagaagagtccgaagtataagagcggtttc
gcgttaaggttcccgcgctacgtggcgttgagggaagataaaagtccggaggaggcggac
acgatagagagagtcgcccagctctacgagctccaggagaggttcaaggcgaaaaggtaa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (21)   

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