KEGG   Thermococcus gorgonarius: A3K92_05540
Entry
A3K92_05540       CDS       T05047                                 
Name
(GenBank) RNA-binding protein
  KO
K07573  exosome complex component CSL4
Organism
tgg  Thermococcus gorgonarius
Pathway
tgg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tgg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    A3K92_05540
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tgg03019]
    A3K92_05540
Messenger RNA biogenesis [BR:tgg03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     A3K92_05540
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     A3K92_05540
SSDB
Motif
Pfam: ECR1_N EXOSC1 S1 Auto_anti-p27 A2L_zn_ribbon DZR zf-ribbon_3 HVO_2753_ZBP Prok-RING_1 FtrD-like Rrp40_N Zn_Tnp_IS91 Trm112p Zn_Tnp_IS1595 NOB1_Zn_bind RNA_POL_M_15KD zf-C3HC4 Zn-ribbon_8
Other DBs
NCBI-ProteinID: ASJ00978
UniProt: A0A2Z2MGA8
Position
989148..989735
AA seq 195 aa
MEVKKTPKEGDLVLPGDHLGVIEEYLPGEGVKEENGELIATRAGRVRIDKEKMEIHVEPV
TDIPPLPKVGDIVLAQVIDVKPQAVIAHLLRIEGEGGREIATSKLAGIHVSQIKNGFVED
ISNEFKIGDIVRARVISNEKSPIQLTTKDPDLGVVYAFCSKCRTPLIRRGDKLICPKCGN
VETRKLSRLYRKLVI
NT seq 588 nt   +upstreamnt  +downstreamnt
atggaggttaaaaagacaccaaaagaaggcgatttagtgctccccggggatcacctggga
gttattgaagagtatctcccgggtgagggcgtgaaagaagaaaacggcgagttaatagct
acaagagcaggaagggttagaatagataaggagaaaatggaaatccacgtcgagcccgtg
acggatataccaccccttccaaaagttggggacatagttctggcacaggtcattgatgtt
aagccccaggcggttatagcccatcttcttagaatagagggagaaggcggaagagaaatc
gctacttcaaaactggccggaatccatgtctcccagatcaaaaacggttttgtcgaggac
ataagcaacgagttcaaaataggcgatatagtccgcgctagggtaatctctaacgaaaag
agcccaattcagcttactacaaaagatccagacttgggagtagtttacgcattctgctcc
aaatgcagaacgcctctcataagaagaggggacaaactgatctgccccaagtgcggaaac
gttgaaacaagaaagctctcaaggctctaccgcaagctggtgatctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (18)   
   Pfam (18)   
All databases (26)   

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