KEGG   Taeniopygia guttata (zebra finch): 100220035Help
Entry
100220035         CDS       T01082                                 

Gene name
LAMC1
Definition
laminin, gamma 1 (formerly LAMB2)
Orthology
K05635  
laminin, gamma 1
Organism
tgu  Taeniopygia guttata (zebra finch)
Pathway
Focal adhesion
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:tgu00001]
 Environmental Information Processing
  Signaling molecules and interaction
   04512 ECM-receptor interaction
    100220035 (LAMC1)
 Cellular Processes
  Cell communication
   04510 Focal adhesion
    100220035 (LAMC1)
Cell adhesion molecules and their ligands [BR:tgu04516]
 1. Immunoglobulin Superfamily
  Neural system
   Enzymatic CD
    PTPRF, LAR; receptor-type tyrosine-protein phosphatase F [KO:K05695]
     Laminin-1 Extracellular matrix (ECM) components
      100220035 (LAMC1)
 2. Integrin Family
  Beta1 integrins
   VLA-1
    ITGB1; integrin beta 1 [KO:K05719]
      100220035 (LAMC1)
     Laminin-2 Extracellular matrix (ECM) components
      100220035 (LAMC1)
   VLA-2
     Laminin-1 Extracellular matrix (ECM) components
      100220035 (LAMC1)
   VLA-3
      100220035 (LAMC1)
     Laminin-10 Extracellular matrix (ECM) components
      100220035 (LAMC1)
     Laminin-11 Extracellular matrix (ECM) components
      100220035 (LAMC1)
   VLA-6
     Laminin-1 Extracellular matrix (ECM) components
      100220035 (LAMC1)
     Laminin-8 Extracellular matrix (ECM) components
      100220035 (LAMC1)
   VLA-7
     Laminin-1 Extracellular matrix (ECM) components
      100220035 (LAMC1)
  Beta4 integrins
   alpha 6 beta 4
    ITGB4; integrin beta 4 [KO:K06525]
     Laminin-1 Extracellular matrix (ECM) components
      100220035 (LAMC1)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
Position
Un
AA seq 1306 aa AA seqDB search
EWVTATDIRVTLNRLNTFGDEVFNDPKVLKSYYYAISDFAVGGRCKCNGHASECVKNELG
KLVCNCKHNTFGVDCEKCLPFFNDRPWRRATAESANECLPCDCNGRSQECYFDPELYRAT
GHGGHCTACAGNTDGPRCERCRDSFYRLASDQGCLPCSCNPVGSLSTQCDSYGQCSCKPG
VMGDKCDRCQPGFHSLSEAGCRPCSCNAAGSTGECNVETGRCACKDNVEGFHCERCKPGF
FHLDSSNPRGCTPCFCFGHSSVCTSAVGYSIYSITSNFEFGKIELSFVSQDLVLEGAGLR
VSVPLIAHGNSYPSENVQTYTFRLHEAADYPWRPALTAFEFQKLLHNLTSIKIRGTYSER
SAGHLDDVTITSARPGPGVPVAWVESCSCPVGYEGQFCERCTSGYRRETPGLGPYSPCVP
CACNGHSETCDPETGMCNCRDNTAGTHCEKCSDGYYGDATAGTASDCQPCPCPGTSSCAI
VPRTKEVVCTSCQAGTTGKRCELCDDAYFGDPLGRNGAVRPCRLCQCNNNIDPNAVGNCD
RQTGECLKCIYNTAGFYCDRCKDGFFGNPLASDPADKCRACHCNPYGTVNHQTICNQVTG
QCECLSHVTGRDCSACEPGFFNLQSGRGCERCNCHALGSTSGQCDIRTGQCECQPGVTGQ
QCDSCESNHFGFGSEGCKPCDCDPEGSRSLQCRENGHCECKEGFVGSRCNQCEENYFYNR
SWPGCQECPACYRLVKDKVAEQRQRLQELENLIANLGTREETVTDEAFEERLKQAEREVT
ELLHEAQKSKDVDQGLMDRLKDINSTLVSQLNRLRNIQGTVQETESLAEQARVRVEDTED
LISMASDMLEKAKMAADNVSITPPEQSGDPNNMTLLAEEARKLAERHKKEADEIVRTAKA
ANDTSTEAYQLLLKTLAGENQTAIDIDELNQKYNQARNISRDLEKQANKVLAEAEEAGNR
ALQIYANLTSLPTVDSTGLENKANKIKKEAEELDQLIARKLKDYEDLREDMKGKELEVKN
LLEKGKTEQQTADQLLARADAAKALAEEAARKSSGTLQEANTILRNLKDFDRRVNDNKTA
AEEALKKIPAISQTIAEANNKTHQAELALGNAAADAREAKARADDAEKIASSVQKSAAAT
RAEADKTFADVTGLAREVDDMMKQLQDAEKELKRKQADAEQDMKMANEASQAAQEAEDNA
RKAKNSVNSLLTVINDLLDQLGQLETVDLNKLNEIEGTLNSAKDQMKDSDLDQKVSFLER
EAKKQDDAIQAYNRDIEEILKDISNLEDIRKTLPSGCFNTPSIEKP
NT seq 3921 nt NT seq  +upstreamnt  +downstreamnt
gaatgggtgacagctacagatattagagtgaccctcaaccgtctgaacacatttggagat
gaagttttcaatgacccaaaagttctcaagtcttactactatgcaatttctgattttgct
gtgggtggtaggtgcaaatgcaacgggcacgcgagtgagtgtgtgaagaatgagcttggg
aagctggtctgcaactgcaagcacaacaccttcggggtggactgtgaaaagtgccttccc
ttcttcaacgaccgcccgtggaggagagcgacggcggagagtgccaacgagtgcctgccg
tgcgactgcaacgggcggtcccaggagtgctacttcgaccccgagctgtaccgcgccacg
ggccacggcggccactgcacggcctgtgccggcaacaccgacgggccccgctgtgagcgc
tgccgggacagcttctaccgcctggccagcgaccagggctgtctgccctgcagctgcaac
cccgtcggctccctcagcacgcagtgcgacagctatggccagtgcagctgcaagcctggt
gtgatgggggacaagtgtgaccggtgccagccagggttccactccctctccgaagctggg
tgcaggccctgttcttgcaatgctgctggcagcacaggggagtgcaacgtggagacaggg
cggtgtgcgtgcaaggacaatgtggaaggattccactgtgagagatgcaaacctggattt
ttccatctggattcctccaatccaagaggctgtactccctgcttctgttttggacactct
tcagtctgcaccagtgctgtgggctacagcatctatagcatcacgtccaactttgagttt
ggtaaaattgagctttcctttgtatctcaggacctggtgctggagggggctgggctgaga
gtgtcggtgcctctcattgcccacggcaactcctaccccagtgagaatgtgcagacctac
accttcaggctccatgaggctgcagattacccgtggaggcctgctcttacagcatttgaa
ttccaaaagcttctgcacaacttgacttccatcaagatccgtgggacatacagtgagaga
agtgccggccacctggacgatgtcaccatcacgagtgctcgccccggacccggcgtgcct
gtggcctgggtggagagctgctcgtgtcccgtgggatacgaagggcagttctgtgagcgc
tgcacctctgggtaccgccgggagaccccaggcctcgggccctacagcccctgcgtgccc
tgcgcgtgcaacgggcacagcgagacctgtgatcccgagacgggcatgtgcaattgcagg
gataacacggcggggacgcactgtgagaagtgcagcgatgggtattacggcgatgccaca
gccggcacagcctcggactgccagccctgcccgtgcccaggcacctcgagctgtgccatt
gtgccccgcaccaaggaggtcgtgtgcaccagctgccaggctggcactacaggcaagagg
tgtgagctgtgtgatgatgcctatttcggagacccactgggcagaaatggtgctgtgagg
ccctgccgcctgtgccaatgcaacaacaacattgaccccaatgccgtgggcaactgcgac
cgccagaccggagagtgcctcaagtgcatctacaacaccgccggcttctactgtgaccgc
tgcaaggatggcttcttcgggaaccccctggcctctgaccccgctgacaagtgcagagct
tgtcactgcaatccctacggcacagtgaatcatcagacaatctgcaatcaagtgactggg
cagtgtgagtgcttgtctcacgtcactgggagggactgcagtgcctgtgagcctggattc
ttcaacctccagagtggacgtggctgtgagaggtgcaactgccacgcgctgggctccacc
agcgggcagtgtgacatccggacggggcagtgcgagtgccagccaggcgtcaccggccag
cagtgtgacagctgtgagagcaaccacttcggctttggctctgaaggctgcaaaccctgc
gactgtgatcctgagggctcgcggtccctgcagtgccgggagaacggtcactgcgagtgc
aaggagggcttcgtggggagccgctgcaaccagtgtgaggagaactatttctacaaccgc
tcgtggccaggctgccaggagtgtccagcctgttacagactagtgaaagataaggtggca
gagcaacgtcaaaggctgcaggagttggaaaatcttatagcaaatctgggtaccagagaa
gaaactgtaactgatgaagccttcgaagagcggttgaagcaggcagagagagaagttaca
gagctgctccatgaagcacaaaagagcaaagacgtagatcagggcctcatggatcgtctc
aaagacatcaacagcaccttagtgagtcagctcaacaggctgaggaacatccagggcaca
gtgcaggagacggagagcctggcggagcaggcccgggtgcgggtggaggacacggaggac
ctgatcagcatggcttctgacatgctggagaaggccaagatggcagctgacaacgtgtcc
attacacctccagagcaaagcggggaccccaacaacatgactctgttggcagaagaggcc
cgtaagctggcagaaaggcataaaaaggaagctgatgagattgttcgcacagccaaggct
gcaaatgacacttccacggaagcgtatcaactgctgctgaagacgctggctggagaaaac
caaactgcaattgatattgatgagctcaatcagaagtacaatcaagcaaggaatatttct
cgagacctagagaaacaggccaacaaggtgcttgcggaggcagaggaagctggaaacaga
gccctgcagatatatgctaatctcaccagcctgcctactgtggattccacggggctagag
aataaagcaaataagatcaagaaggaagcagaggagctggatcaactaattgccaggaag
ctaaaggattacgaggacttgagagaagatatgaaaggaaaggagctagaagtaaagaac
ctcttggagaaagggaagacagagcagcagactgcagaccagctgttggcacgagcagat
gcagcaaaagccctggctgaagaagctgctcggaagagcagtggcacgctacaggaggcc
aataccattctcaggaacctgaaagactttgacaggcgggtgaacgataacaagacagca
gccgaggaggcactgaagaagatccctgccatcagccagaccattgcagaggccaacaac
aagactcaccaggcagagctggcactgggcaacgctgctgctgatgcccgtgaggccaag
gccagagcagatgatgctgagaagattgccagctctgttcagaagagtgctgctgctacc
agagccgaagccgacaagacctttgctgatgtgacaggactggccagggaagtggatgac
atgatgaagcagctgcaggatgcagaaaaggagctgaagcggaagcaggccgatgctgag
caggatatgaagatggcaaatgaggcctcacaggctgcccaggaggcagaagacaatgca
agaaaagctaagaactccgtgaacagcctgctcactgtcattaatgacctgttggatcag
ctagggcaactggagacagtggacttgaacaaactgaatgaaattgaaggtaccctgaac
agtgccaaagaccagatgaaagacagtgacctggaccagaaagtgtctttccttgagaga
gaggccaagaagcaagatgatgcgatacaggcctacaacagggacattgaagagatcctg
aaggacattagcaacctggaagacatcaggaagactttgccatctggctgtttcaacacc
ccgtccattgagaaaccctaa

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