KEGG   Taeniopygia guttata (zebra finch): 100221893
Entry
100221893         CDS       T01082                                 
Symbol
LTN1
Name
(RefSeq) E3 ubiquitin-protein ligase listerin
  KO
K22377  E3 ubiquitin-protein ligase listerin [EC:2.3.2.27]
Organism
tgu  Taeniopygia guttata (zebra finch)
Brite
KEGG Orthology (KO) [BR:tgu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:tgu03009]
    100221893 (LTN1)
   04121 Ubiquitin system [BR:tgu04121]
    100221893 (LTN1)
Enzymes [BR:tgu01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     100221893 (LTN1)
Ribosome biogenesis [BR:tgu03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    100221893 (LTN1)
Ubiquitin system [BR:tgu04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    100221893 (LTN1)
SSDB
Motif
Pfam: zf-RING_2 zf-ANAPC11 zf-rbx1 FANCL_C RINGv zf-RING-like zf-C3HC4 zf-RING_16 zf-C3HC4_2
Other DBs
NCBI-GeneID: 100221893
NCBI-ProteinID: XP_002190030
Ensembl: ENSTGUG00000013590
Position
1:complement(3866176..3897050)
AA seq 1767 aa
MGGKNKQRTKGNVRPSSSGRAAELLAKERGTVPGFIGFGTSQSDLGYVPAIQGAEEVDSL
VDADFRMVLRKLSKRDVTTKLKAMQEFGTMCKEREAEVVKGVLPYWPRIYCKISLDHDRR
VREATQQSFEQLILKVKKHLAPYLKSIMGYWLIAQCDTYSPAASAAKVAFEKAFPSSKQP
EALVFCKDEILNVLQDHLLKETADTLSDPQTVPEEEREAKFFRILTCSLLALKKLLSMLP
KKEMHSLEEKLMSLLSQNKFWKYSKNSISQVRSAFFELISAFCQHLPEVVKAEAPRVCPA
VLLSIDDSDAVVCPALWEAVLYTITTIEDCWSHVNARKGVLPKLWAVLREGGRGLATVIY
PNLLPFISKVPPDVVEPKLEYFRVFFSSIIQGLSSERTTASPSESSAIITAFMECLCFAI
LQKREEDQSQIHQMLICDQLIPFISAVLKEPKLQSGPLFYQTAEMLSSWEAKAELSNDDG
TDEVFQKLLSDFWGHLLKMCVLHVDRLDADEKLLFAISGMLEILQNPKTATKPNNRKSLK
IRFTDEDESERNTESLKLMERNSDSEIQADLQQTSHLRKEPLENLVCSLAELSIVYVNEH
KSEQHLKFLSALLNTFSSNRVFQVLLERGNDVSPAQADSKNEVKAHNRSPSVQFLYLNLI
TWLKEDWRKDTHFLVDILYSVLHCCNNNDERKAILDDLAKMDLKWVIFLQIIQKACSSTR
KLSLVSDWLKGDTLGEKLVVLADDLCHLGLKPRAASSGSASSERWTLLSLVLSQHIKSES
LIGETFVERIIDKLQAALSEAKDLSEAGDTESSVSFICDVASSFFSSVKGCLLMPSSEDL
LLTIFQLCAHRQDATHLTDVLVCKLKHTWMSGVNSLVHQLQGTQKQSTFLLKAALWVKNQ
VQSSSLDVKSLQVLISAVSDLLLKLMEADGQSGYLVRAYVEHVTPNKIEWRKLHESLCSE
WMHKPLLEGRLSMNCEPLESSVKLCDTNKLPGHLCTSALLSKMVLLQLKNSVLHGNHDAE
RKKIDNIIAELLYSLQWIEELQNPPYLLLEYLHMLEEMHITYGEFSTLNSTASLQQTIFD
RSEEHGRLWSLTMAKVIRAENAVSWERKELFKTADGFLPLTEGRLHTLQCLSSFLTEEEK
RELVFHCVAKLMTCTQTELSSTDGAFGCLSILNSCLKDRSIDCDHLLPAILKIIISWKND
NEDSFLFSCSLKEASAQLLGFNIEMMRYLPLLLKYSTAPLADNEWDFLMCSMLAWLETTS
ESRLLYHVPLVQIFACVSCDLASALSAYFEAAAPDSTANLPKNLVSEWKEFFSEGIHNLL
LPLLVKITGETKNASEGSFQNSVLSSLGEALTYISKEQLLNHKLPPKFVAGQKTNLPDEL
QTLLNTLSPLLLFRARPVQVSVYHMLHKLMPELPKFDDEDLKSYGDEEEELALSPPAALM
SILATQELLLENTLESIPVGEFAVIQPLSDEFCLVLGYLLTWKLTLAFFKAASSQLRVLY
SQYFRRTKSLNKLLYHLFRLMPENPVFSGPTSEVPNKDTKTFFTEELHLDVKGSGVLSSQ
IPHLACSVYHITLKDLPAMVRLWWNSCEKRVFNVVDKFTSKYVSSVLSSQEISSVQTSTQ
LFNGMTVKARSAAREVIATYSVDDIFIELIIQLPSNYPLGSITVESGKRVGVAVQQWRNW
MLQLSTYLTHQNGSIMEGLSLWKNNVDKRFEGVEDCMICFSVIHGSNYSLPKKACRTCKK
KFHSACLYKWFSSSNKSTCPLCRETFL
NT seq 5304 nt   +upstreamnt  +downstreamnt
atggggggcaagaacaagcagcgaaccaagggcaacgtgcggccttctagcagtggccga
gctgcagagctccttgccaaagaacgtggaacagtgcctgggtttatcggctttggaaca
tctcagagtgatcttggatatgttcctgcaattcaaggagcagaggaagtagacagcctt
gtggatgctgatttccgaatggtgttgcgaaaactatctaaaagggatgtcacaaccaag
ttaaaagctatgcaagagtttgggacgatgtgcaaggaaagagaagcggaagttgttaaa
ggtgttcttccttactggccgagaatttattgtaaaatttcactagatcatgatcgccgt
gttcgagaagcaactcagcaatctttcgagcaactgattcttaaagtaaaaaaacactta
gctccttacttaaaaagtatcatgggttactggctgattgctcagtgtgacacttactcc
cctgctgcttctgctgcaaaagtagcttttgaaaaagcttttccttcgagcaaacaacct
gaagccttagtattctgtaaggatgaaattcttaatgtacttcaagatcaccttctgaag
gaaacagctgatacactcagtgaccctcaaactgtaccagaagaagaaagggaagccaaa
tttttccggattctgacctgttccttgttagctttaaaaaagttgcttagcatgttgcca
aagaaagagatgcattcattggaagaaaaattaatgtcacttctgtcccaaaacaaattt
tggaaatacagcaaaaacagcatatcacaggttcgctcagctttctttgagctgatttct
gctttttgccagcacttgcctgaagtggtgaaagctgaagcaccaagagtttgtcctgct
gttcttctcagcattgatgacagtgatgcagtggtgtgtcctgctctttgggaagcagtg
ctttatactatcaccactattgaggactgttggagtcatgtgaatgccagaaaaggagtt
ctgccaaagctctgggcagtgcttcgagaaggtgggcgaggattagctactgttatctac
cccaacctcctgcccttcattagcaaggtgcctcctgatgttgtggaaccaaagctggaa
tacttcagagtttttttcagctctataattcaagggttgtcaagtgagaggacaacagcc
agtccttcagaaagttcagcaattataactgcatttatggagtgtctgtgctttgctata
ctacagaaaagagaagaagaccaaagccaaattcatcaaatgcttatatgtgaccagcta
attccttttatcagcgctgtacttaaggagcccaagttacaaagtggaccattattttat
caaacagcagaaatgctgagttcctgggaagccaaagcagaactctccaatgatgatggc
acagatgaagttttccagaaactgttgtcagatttttggggccatcttttaaaaatgtgt
gtacttcatgttgataggttggatgctgatgagaaattactgtttgccatatctggtatg
ctagaaattcttcagaatccgaagactgctacaaaaccaaacaatagaaaatctctaaaa
atcagatttacagatgaggatgaatctgaaaggaacacagagagtctaaagctcatggaa
agaaatagtgactctgaaattcaggctgacttgcagcaaacttcacatctaaggaaagaa
cctctagagaacttagtctgcagcctggctgagctgagtattgtgtatgtcaatgaacat
aagtcagaacagcatttgaaatttctctctgccctgctcaacactttttcctcaaacaga
gttttccaagtacttttagagcgaggaaatgatgtaagtcctgctcaagctgattccaaa
aatgaagtgaaagctcataaccgaagtccatctgtacaatttctgtatctgaatttaata
acctggctgaaagaagactggagaaaagacacccatttcctggttgatattttatacagt
gtacttcattgttgcaacaataatgatgaaaggaaagccattcttgatgatttagcaaag
atggatctgaagtgggttatttttctccagataattcaaaaggcatgctcaagcacaagg
aaactttccttagtctctgactggctgaaaggagacacgcttggagaaaaactggtagtg
ctggcagatgatctttgtcacctgggcttaaaacccagagcagcctcctcaggatcagcc
tcttcagaaaggtggaccctcctgagcttggtgttgtcacagcacattaaaagtgaatca
ttgattggtgaaacctttgttgaaaggattattgataaacttcaagcagctctatctgaa
gcaaaggatctttctgaagctggagatactgaatcatcagtatctttcatctgtgacgtg
gcctcaagctttttcagctcagtgaaaggctgtttgctgatgccatcctcagaggacttg
ctccttaccatcttccagctctgtgctcacaggcaggatgcaacacacttgacagatgta
cttgtatgcaaattaaaacacacttggatgtctggtgtaaattcacttgtgcatcagctt
cagggcactcagaaacagagcacctttttgcttaaagctgcactgtgggtcaagaatcaa
gttcagtcttcctctttggatgttaaaagtcttcaggttttgatctctgcagtcagtgat
ttattgttgaagctcatggaagctgatggacagtctggatatcttgtgagagcttatgtt
gagcacgtcacaccaaacaaaattgagtggaggaaattgcacgagtctctgtgctctgag
tggatgcacaagcctcttttggaaggaaggcttagtatgaattgtgaacctctggaatca
agtgtcaagctgtgcgacacaaataaacttccaggccatctgtgtacttcagccttatta
agtaaaatggtgctacttcagctgaaaaatagtgtactccatggaaatcatgatgctgaa
agaaagaaaattgataatataattgcagaactgttgtattcattacaatggattgaagaa
ttgcagaatcctccttatctgcttctggaatatcttcatatgttagaagagatgcacatc
acatatggggagttcagtactctgaatagtacagctagcctgcagcaaactatatttgac
agatcagaggaacatggaagactctggtccttaaccatggccaaagtgatccgtgctgag
aacgctgtatcctgggagaggaaagagcttttcaagacagcagacgggttccttccatta
acagagggcagattgcatacacttcagtgtttatcatctttcttaactgaggaagaaaag
agggaacttgtcttccactgtgtggccaaacttatgacatgtacacagacagagctttcc
agcactgacggagcatttgggtgtctttccattttgaattcctgcttgaaggatagaagt
attgattgtgatcatctgctacctgcaatactgaaaatcataatatcttggaaaaatgat
aatgaggacagctttctctttagctgcagtctgaaagaagcgagtgctcaattgcttggt
ttcaacattgagatgatgcgttaccttcccttgttgctgaaatattccacagctcctttg
gctgataacgagtgggactttttgatgtgctccatgctggcttggttagagacaacaagt
gaaagccgtttgctttaccatgtcccgcttgtgcagatttttgcttgtgtcagttgtgac
ttggcatctgcccttagcgcttactttgaggctgcagctcctgacagtactgcaaatctt
cctaagaacttggtcagtgaatggaaagaattcttttctgagggaattcacaatttgctg
ttacctttgttggtgaaaatcacaggagaaaccaaaaacgcatcagaaggctcttttcag
aactctgtgttatcatctttgggtgaagctctaacttacatctcaaaggagcagttgtta
aaccataagctgccaccaaagtttgtggcaggccagaagacaaatcttccagatgaactc
cagactctactgaacacactctctccattgttgcttttccgggctcgacctgtacaggtt
tctgtctaccatatgctgcataaattaatgcctgaattgcctaaatttgatgacgaagat
ctcaagtcctatggtgatgaagaggaggaactggcgctatcacctccagcagctcttatg
tctatcctggcaactcaagaactcttgctggaaaataccctggagtccattccagttgga
gaatttgcagttattcaacccctgagcgatgagttctgccttgttctgggatatcttctc
acttggaagttaacattagctttctttaaagcagcttcttctcagctacgagttctctac
tcacaatactttagaagaactaaaagcttgaataaactgctttatcacttgttcaggctt
atgcctgaaaaccctgtcttttctgggccaacttcagaagttccaaataaggatacaaaa
accttctttactgaagagcttcatttagatgtcaaagggtcaggggtgctgtcatcccag
atcccacacttggcctgctctgtgtaccatataacactgaaagatctgccagccatggtg
aggctgtggtggaatagctgtgagaagcgtgtcttcaatgttgtggataaattcacaagc
aaatatgtcagcagtgtgctctcctcccaggaaatatcttctgttcagactagcactcag
ttatttaatggcatgacagtaaaagctcggtctgcagcacgagaagtcattgcaacctat
tctgttgatgatatctttattgaactaataatacagcttccatcaaattatccactggga
tccataacagttgagagtggaaagagggttggtgtggctgtgcagcagtggcgcaattgg
atgctacagttaagcacatatcttacacatcagaatggaagtattatggaaggcttatct
ttatggaaaaataatgtggataaacgttttgaaggcgttgaagattgcatgatctgtttt
tcagtcattcatggttcaaactattctcttcccaaaaaagcttgcagaacatgcaagaag
aagtttcattcagcttgcttgtacaaatggttctcatccagcaacaaatccacatgtcca
ctctgtcgagagacattcttgtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (32)   
   KEGG ORTHOLOGY (1)   
   RefGene (27)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (49)   

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