KEGG   Taeniopygia guttata (zebra finch): 100227075
Entry
100227075         CDS       T01082                                 
Symbol
ZCCHC7
Name
(RefSeq) zinc finger CCHC domain-containing protein 7
  KO
K12597  protein AIR1/2
Organism
tgu  Taeniopygia guttata (zebra finch)
Pathway
tgu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tgu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100227075 (ZCCHC7)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tgu03019]
    100227075 (ZCCHC7)
   03016 Transfer RNA biogenesis [BR:tgu03016]
    100227075 (ZCCHC7)
Messenger RNA biogenesis [BR:tgu03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     100227075 (ZCCHC7)
Transfer RNA biogenesis [BR:tgu03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    100227075 (ZCCHC7)
SSDB
Motif
Pfam: zf-CCHC zf-CCHC_3 AIR2-like_ZnK4 zf-CCHC_2
Other DBs
NCBI-GeneID: 100227075
NCBI-ProteinID: XP_030113878
Position
Z:complement(78592670..78684036)
AA seq 593 aa
MDQNSDSSLSRIFTGYGLEDTEVYEDELYPEESSSEQSVDSEVEFHLYSQIHYSQDLGEI
STLEMGEEAEVGGAMDQSSGLTEKQDEDEKLTGGGTQLSDEPEIIVLSDTPDEDSIYKSK
AKRPRYSSAQGKTHIHPVSSTPNHTRAAGCNAPCPPESGVRTPRQRSSSSGRPAPAFAAG
PSAIEDVFSAGPSAIEDLLVIDSSSEEEEEISDSDNIESWMLLGAGADDSDGDIMLNLEG
CAAAVRKGKTDVNWSISHKDLEAQISNYGGVRHSSMRYYRGDKSVTCRNCQRPGHLSKNC
PTPKKAPPCCLCAGRDHLQHSCPARFCLNCCLPGHCFKECLERAYWNKHCNRCDMKGHYA
DACPEIWRQYHLTTKPGPIKAADSPSERAVSVYCYNCSRKGHLGYECSEKRMQGNMFPTS
PFVCYYDDECDIKRRANRLKRKVADLQEAGLLPEQSETPLQEEQLEAPSHKKKSKLSKLW
KEQQGKPSRSSEQQKKMKVNRAKKAQEKHRRDAQMHSEAEDFPRGHRQQGCKGSRARRRS
LFQALSGKATCAEQPLEGAKRKKKWKKQRNDSPDSRDNLFLIKQRKKSKQKSW
NT seq 1782 nt   +upstreamnt  +downstreamnt
atggatcaaaactcggactcttcactttccagaatatttactgggtatggtcttgaggat
actgaagtgtacgaagatgaactttatcctgaggagtcgtccagcgagcagagtgttgat
agtgaggtggagtttcatctctacagccagatccactactcccaggaccttggagaaatc
agcacactggaaatgggtgaagaagctgaggttggaggagccatggatcaaagttcaggt
ctgactgagaaacaggatgaagatgagaaactcactggtggtggtactcagctttcagat
gagcccgagatcatcgtcctgtctgataccccagatgaagatagcatatacaaaagcaag
gcaaagaggccaagatattcttcagctcaaggtaaaacacacatccaccccgtatcttcc
acaccaaatcacaccagagctgctggatgtaatgccccgtgtccccctgagtctggcgtg
cgcaccccaaggcagagaagcagcagcagtgggaggcctgccccagcctttgctgctgga
ccttcagccatcgaggacgtgttttctgctggaccttcagccatcgaggacctgttggtg
atagacagcagctcggaggaggaggaggagatctctgacagtgataacatcgaaagctgg
atgctcctgggagctggtgctgatgactcggatggagacatcatgttgaacctcgagggc
tgtgccgctgctgtcaggaaaggaaaaactgatgtgaactggtccatctctcataaagac
ttagaggcacagatctccaactatgggggtgtgaggcacagcagcatgcggtactacaga
ggtgacaaaagtgttacgtgtaggaactgccagagaccaggacatttgtccaagaactgt
cccactccaaagaaagcccccccgtgctgtctgtgtgcaggaagagaccatctgcagcac
agctgcccagcacgtttctgcctgaactgctgcttgcccgggcactgtttcaaggagtgc
ctggagagagcctattggaacaaacactgcaaccgctgcgacatgaagggccactatgct
gatgcttgcccagaaatatggaggcagtatcacctaacaacaaagccgggacccatcaag
gcagcagactcgccctcggagcgcgcggtgtccgtgtactgctacaactgctcccgcaaa
ggacacctcggatacgagtgctcagagaagaggatgcagggaaacatgttccccacttct
cccttcgtctgctactacgatgatgagtgcgacatcaagaggagagccaacaggttaaaa
agaaaggtggcagacctgcaggaagccggccttctgccggaacagtctgaaacacccctt
caggaggagcagcttgaggcgcccagccacaagaaaaagagcaagcttagcaagctttgg
aaagaacaacaggggaagccaagcaggagcagtgagcagcaaaagaagatgaaggtgaac
cgggcaaagaaggcccaggagaagcacaggagggatgctcaaatgcacagcgaggcggag
gacttccctcgggggcacaggcagcagggctgcaagggcagcagggcccgccgcaggtcc
ctcttccaggcactctcaggcaaggccacgtgtgctgagcagcctctagaaggtgccaaa
aggaagaagaaatggaaaaagcagagaaatgatagtcctgacagcagggacaatctattc
cttataaaacagcggaagaagtccaagcagaaatcctggtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (4)   
   Pfam (4)   
All databases (16)   

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