KEGG   Thermococcus guaymasensis: X802_09275
Entry
X802_09275        CDS       T04184                                 
Name
(GenBank) RNA-binding protein
  KO
K07573  exosome complex component CSL4
Organism
tgy  Thermococcus guaymasensis
Pathway
tgy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tgy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    X802_09275
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tgy03019]
    X802_09275
Messenger RNA biogenesis [BR:tgy03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     X802_09275
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     X802_09275
SSDB
Motif
Pfam: ECR1_N EXOSC1 S1 Auto_anti-p27 PCB_OB DZR NOB1_Zn_bind zf-ribbon_3 Prok-RING_1 A2L_zn_ribbon HVO_2753_ZBP Nudix_N_2 Intein_splicing RRP4_S1 zf-TFIIB Trm112p
Other DBs
NCBI-ProteinID: AJC72310
UniProt: A0A0X1KM41
Position
1630471..1631058
AA seq 195 aa
METKKPAKEGELVLPGDYLGVIEEYLPSDGVKEENGNLIATRAGRVRINMEKMEISVEPV
TDTPPLPQVGDTVLAQVLEVKPQVVIVQLLRIEGKGNREIATSKLAGIHVSQVKNGFVED
MSKEFKVGDIVRARVISNEKTPIQLTTKGPDLGVVYAFCSRCRTPLIRRGDRLICPKCGN
VEMRKMSNLYRKMVI
NT seq 588 nt   +upstreamnt  +downstreamnt
atggagactaaaaagccggctaaagagggagagcttgttctcccgggagattatttaggt
gtaatcgaggagtacctgccgagtgatggcgttaaggaagaaaacggtaacctcattgcg
acccgagccgggagggtcaggataaacatggaaaagatggaaataagcgttgagcccgtc
acggacactccaccgctcccacaggttggtgacaccgtgctggcccaggttctggaggtg
aagcctcaggtggtcatagtccagctcctcaggatagagggcaaggggaacagggagata
gcgacatcgaagcttgctggaatccacgtctcacaggtgaagaacggtttcgttgaggac
atgagcaaggagttcaaggtcggcgacatagtaagggcgagggtcatttcaaacgaaaaa
actcctattcagcttacgacaaagggtcccgaccttggcgtggtgtacgccttctgctcg
cgctgcaggacgcccctcatacggcgcggggacaggctcatctgccccaagtgcggcaac
gtagagatgagaaaaatgtcaaacctctaccgcaagatggtgatctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (16)   
   Pfam (16)   
All databases (24)   

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