KEGG T01638: TAM4

Thermococcus sp. AM4: TAM4_1751

Entry

TAM4_1751 CDS T01638

Definition

ATP-dependent DNA ligase

Orthology

K10747

DNA ligase 1 [EC:6.5.1.1]

Organism

tha Thermococcus sp. AM4

Pathway

tha03030	DNA replication
tha03410	Base excision repair
tha03420	Nucleotide excision repair
tha03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; DNA replication [PATH:tha03030]
Genetic Information Processing; Replication and repair; Base excision repair [PATH:tha03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:tha03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:tha03430]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DNA_ligase_OB_2 Peptidase_S7 TPR_1 UCR_UQCRX_QCR9 Corona_NS1

Other DBs

NCBI-GI:

223478331

NCBI-GeneID:

7420290

UniProt:

B7R216

Position

990656..992344

AA seq 562 aa
MGDMKYLELAELYRRLEKTTLKTLKTKFVADFLKKTPDDLLEIVPYLILGKVFPDWDERE
LGVGEKLLIRAVSMATGVPEKEIENSIKDTGDLGESVALALKKRKQKSFFSQPLTIKRVY
NTFVKVAEASGEGSQDRKMKYLANLFMDATPEEGKYLARTVLGTMRTGVAEGILRDAIAE
AFKVKPELVERAYMLTSDFGYVTRVAKLEGNEGLSKVSIQIGKPIRPMLAQNAANVKEAL
IEMGGEAAFEIKYDGARVQVHRDGDRVIIYSRRLENVTRSIPEIVEAVKASLRPSKVIVE
GELVAVGENGRPRPFQYVLRRFRRKYNIEEMIEKIPLELNLFDILYVEGESLIDTKFAER
RKKLEESVEESDKIKLAEQLVTKKVDEAEEFYKRALELGHEGLMAKRLDSVYEPGNRGKK
WLKIKPTMENLDLVIIGAEWGEGRRAHLLGSFLVAAYDPESGEFVPVGKVGSGFTDEDLI
EFTKMLKPLIVREEGKFVEIQPKVVIEVTYQEIQKSPKYKSGFALRFPRYVALREDKSPE
EADTIERVAQLYELQEKFKAKR

NT seq 1689 nt +upstreamnt +downstreamnt
gtgggcgacatgaagtatttagagctggccgagctttaccggaggcttgagaagaccacg
ctcaaaacgctcaagacgaaatttgtggcggacttcctcaagaagacgcccgacgatctg
ctcgagatagttccataccttattctcggcaaggtcttccccgattgggacgagcgcgag
ctcggcgtcggtgagaaactcctcataagggccgtttcgatggcgacgggcgttcccgag
aaggaaatcgagaactcgattaaggacacgggggatttgggcgagagtgtggctttggct
ctaaagaagagaaagcagaagagcttcttcagccagcccctcacgataaagcgcgtttac
aacaccttcgtcaaggttgccgaggcgagcggagaggggagccaggacaggaagatgaag
tacctggccaatctcttcatggacgcgacgcccgaggagggcaaatacctggcaagaaca
gtcctcgggacgatgagaaccggcgtcgccgagggaatcctgcgcgatgccatagcagag
gccttcaaggtgaagcccgagctggtagagagggcctacatgctcacgagcgacttcggc
tacgtgacaagggttgccaagctcgaggggaacgaggggctctcaaaggttagcatacag
attgggaagccgataaggccgatgctagctcaaaacgccgccaacgtcaaggaagcgcta
atcgagatgggcggtgaggcagccttcgagattaagtacgacggcgcgcgcgttcaggtc
caccgcgacggggacagggtgataatctactcgaggagacttgagaacgtcacccgctcg
attcccgagatagttgaggcggtgaaggcctcactgaggccttccaaggtcatagttgag
ggcgagcttgttgcggtaggcgagaacggtcgtccaaggcccttccagtacgtcctgagg
cgctttaggaggaagtacaacatcgaggagatgatcgagaagattccgctcgagctcaac
ctcttcgacatcctctacgttgaaggggagagcctcatcgacacgaagttcgccgagagg
agaaagaagctcgaggagagcgtcgaggaaagcgataagataaagctcgccgaacagctc
gttacgaagaaggtcgacgaggccgaggagttctacaaacgcgctctggagctcggccac
gaggggctaatggcgaagaggctggactccgtctacgagcccggaaaccgcggtaagaag
tggctgaagatcaagcccacgatggagaacctcgacctcgtcattatcggagccgagtgg
ggcgagggaagaagagcccacctcctcggttccttcctcgttgcggcctacgatccggag
agcggtgagttcgtcccggtgggcaaggtcgggagcggtttcaccgatgaagacttgatc
gagttcaccaagatgctcaagcccctgatcgtcagggaggaagggaagttcgtcgagata
cagccgaaggtcgtcatcgaagtaacgtatcaggagatacagaagagccccaagtataag
agcggtttcgcgttaaggttcccgcgctacgtggcgctgagggaagataaaagcccggag
gaggcggacaccatagagagggtcgcccagctctacgagctccaagagaagttcaaggcg
aagaggtga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (20)   

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