KEGG   Thermus sp. CCB_US3_UF1: TCCBUS3UF1_15260
Entry
TCCBUS3UF1_15260  CDS       T01866                                 
Name
(GenBank) Transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
thc  Thermus sp. CCB_US3_UF1
Pathway
thc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:thc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TCCBUS3UF1_15260
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:thc03021]
    TCCBUS3UF1_15260
   03019 Messenger RNA biogenesis [BR:thc03019]
    TCCBUS3UF1_15260
Transcription machinery [BR:thc03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     TCCBUS3UF1_15260
Messenger RNA biogenesis [BR:thc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     TCCBUS3UF1_15260
SSDB
Motif
Pfam: ATP-synt_ab Rho_RNA_bind Rho_N AAA_25 NACHT Spore_III_AA AAA_22 ATPase_2 AAA_24
Other DBs
NCBI-ProteinID: AEV16567
UniProt: G8N8I1
Position
complement(1520868..1522148)
AA seq 426 aa
MRKKTEIQETPLSYQELSAKILPELHLLAQEAGIENYKRMKKDQLIMALLERQTQGEGLQ
LVKGYLEVSPDGYGFLTENLYNLESRVAIVSAGLIRQYALRSGDYVVGRVRPPRENERYG
TLLKVEAVNDLDPEAAKNRPRFDELIPQFPDRQIRLETTPDELSTRVIDLLAPIGRGQRG
LIVAPPKAGKTTLLKKIANAVLKNEPDIKVIVLLIDERPEEVTDFRESVQGAEVIASTFD
EPPQNHIRVAEFVHERAKRIVEEGGHVMILLDSITRLARANNLVTPPTGRTLSGGLDSAA
LYFPKRFLGAARNIRGGGSLTILATALVETGSRMDDVIFEEFKGTGNMELHLSRRLEERR
IFPAIDILKSGTRREELLLGEEVVHKMWLLRKVLADMDPAEAMEMLLARLGRTKSNKEFL
ASLAAR
NT seq 1281 nt   +upstreamnt  +downstreamnt
atgaggaagaagacagagatccaggaaacgcccctttcctaccaggagctttcggccaaa
atcctgccggagctccacctcctggcccaggaggcgggcattgagaactacaagcggatg
aagaaggaccagctgattatggccctcctggaacggcagacccaaggggagggcctccag
ctggtcaaggggtacctggaggtaagccccgacggctatggcttcctgacggaaaacctt
tacaacctggagtcccgggtggccatcgtgtccgctgggctcatccgccagtacgccctg
cggagcggggactacgtggtgggccgggtgcgccccccccgggagaacgagcgctacggc
accctcctcaaggtggaggcggtcaacgacctggaccccgaggccgccaagaaccgcccc
cgttttgacgagctcattccccagttccccgaccggcagatccgtctggagaccacgccg
gacgagctttccacccgggtgattgacctcctggcccccattggccgggggcagcggggg
ctcatcgtggccccgcccaaggcggggaagaccaccctgctcaagaagatcgccaacgcc
gtcctcaagaacgagccggacatcaaggtcatcgtcctcctgattgacgagcggcccgag
gaggtgacggacttccgggaaagcgtccagggggccgaggtcatcgccagcacctttgac
gagccaccccagaaccacatccgggtggcggagttcgtccacgagcgggccaagcgcatc
gtggaggagggagggcacgtgatgatcctcctggactccatcacccgcctggcccgggcc
aacaacctggtcaccccgcccacggggcgcaccctttccgggggtctggactccgcggcc
ctttacttccccaagcgcttcctgggggcagcccggaacatccgtgggggagggagcctc
accatcctggccaccgccttggtggagacgggaagccgcatggacgacgtgatctttgag
gagttcaagggcacgggcaacatggagctccacctctcccgccgtctggaggagcggcgc
atcttcccggccatcgacatcctcaagtcggggaccaggcgggaggagcttcttctgggt
gaggaggtggtgcacaagatgtggctgctccgcaaggtgttggcggacatggatccggcg
gaggccatggagatgctcctggcccggcttggccgcaccaaaagcaacaaggaattcctg
gcctccttggcggcccgctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

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