KEGG T05088: CDI07

Thermococcus sp. 5-4: CDI07_07750

Entry

CDI07_07750       CDS       T05088

Symbol

endA

Name

(GenBank) tRNA-intron lyase

K01170

tRNA-intron endonuclease, archaea type [EC:4.6.1.16]

Organism

thh Thermococcus sp. 5-4

Brite

KEGG Orthology (KO) [BR:thh00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:thh03016]
    CDI07_07750 (endA)
Enzymes [BR:thh01000]
4. Lyases
  4.6  Phosphorus-oxygen lyases
   4.6.1  Phosphorus-oxygen lyases (only sub-subclass identified to date)
    4.6.1.16  tRNA-intron lyase
     CDI07_07750 (endA)
Transfer RNA biogenesis [BR:thh03016]
Prokaryotic type
  tRNA spricing factors
   tRNA splicing endonucleases
    CDI07_07750 (endA)

SSDB

Motif

Pfam:

tRNA_int_endo tRNA_int_endo_N tRNA_int_end_N2 Sen15

Other DBs

NCBI-ProteinID:

ASA78194

UniProt:

A0A1Z2TP45

Position

1402519..1403034

AA seq 171 aa
MKEPIVFQLSGDRVFSEREKAINQFYNKRYFGEVVNGKLFLSLIEAAYLMEKGKIRVFDG
EKELSFKELVELGRKRDDQFDIKLLVYTDLRDRGYTVKSALKFGSHFRVYRRGMDEHSQW
LIWVVPENLRFSPNDITARVRVAHGVRKNMVMAVVDEDNDVVYYKIEWVKF

NT seq 516 nt +upstreamnt +downstreamnt
ttgaaggagccgatagtctttcagctcagcggggacagggtcttcagcgagcgcgaaaag
gcgataaaccagttctacaacaagaggtatttcggcgaggtcgtgaacgggaagctcttt
ctctcgctcatagaagctgcctacctgatggagaagggcaagataagggtttttgatggc
gagaaagagctttctttcaaggaactggtcgagctcggaaggaagcgcgacgaccagttc
gacataaagctcctcgtctacaccgacctgcgcgacaggggctacaccgtcaagtccgcc
ctcaagttcggctcgcacttccgcgtttacaggcgcggaatggacgagcactcccagtgg
ctgatatgggtcgtccccgagaacctccgcttcagcccgaacgacatcaccgcccgcgtg
agggttgcccacggcgtcagaaagaacatggtgatggccgtcgtcgacgaggacaacgac
gtggtgtactacaagatagaatgggtgaagttttag

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (13)   

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