KEGG   Tarenaya hassleriana (spider flower): 104804379
Entry
104804379         CDS       T04125                                 
Name
(RefSeq) polyadenylate-binding protein 2-like
  KO
K13126  polyadenylate-binding protein
Organism
thj  Tarenaya hassleriana (spider flower)
Pathway
thj03015  mRNA surveillance pathway
thj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:thj00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    104804379
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104804379
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:thj03019]
    104804379
   03041 Spliceosome [BR:thj03041]
    104804379
Messenger RNA biogenesis [BR:thj03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     104804379
   mRNA cycle factors
    Stress granule specific factors
     104804379
Spliceosome [BR:thj03041]
 Complex C
  Other components
   Complex C specific factors
    104804379
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_occluded RRM_3 Nup35_RRM RRM_7 SET_assoc
Other DBs
NCBI-GeneID: 104804379
NCBI-ProteinID: XP_010526963
Position
Unknown
AA seq 638 aa
MAQVQLPTQTSNGSVAAAPPASGAQFGTTSLYVGDLEANVTDSQLFDVFSQVGQVVSVRV
CRDLATRRSLGYGYVNFSNPQDAARAIQELNFMTLNGKSIRVMYSHRDPSIRRSGQGNIF
IKNLDKSIDHKALHDTFSAFGNILSCKVVTDSSGQSRGYGFVQYDNEESAQRAIGQLNGM
LLNDKQVYVGPFLRRQERESAVNKTKFTNVFVKNLAESTTDDDLKNIFGEFGQITSAVVM
KDGDGKSKGFGFVNFESADDAGNAVESLNGKTFDDKEWYVGRAQKKSEREMELRLRYEQN
IKEVAEKFQGSNLYVKNLDDSISDEKLKELFSPFGTITSCKVMRDPSGVTKGSGFVAFST
AEEATKAMSEMNGKMIVSKPLYVAIAQRKEDRRARLQAQFAQLRPVMPPSAGPRMPMYPP
AGPGIGQQIFYGQAPPSTMIPPQPGFGYQQQLVPGMRPGGSPVPNFFMPMVQPGQQRPGG
RRGTQQPVPMMQQQMLPRGRMYRYPPGRGSPDAPPAMSGMLPYEMTNMPLREPVLSHQPV
PIGALASALANATPEQQRTMLGENLYPMVEQVEPEAAAKVTGMLLEMDQTEVLHLLESPE
ALKAKVAEAMDVLRSVSSGGAVAAEQLASLSLSDNILS
NT seq 1917 nt   +upstreamnt  +downstreamnt
atggctcaggttcagcttccgacacagacatcgaacggttcggtagcggcggctcctccg
gcgtcgggtgcccagttcggtacgacgtcgctttatgtcggggatctggaggcgaacgtg
accgactcgcagcttttcgatgtctttagccaagtgggtcaggtggtttcggttcgtgtc
tgtcgtgatttagccacccggaggtcgcttggttatggatacgtcaacttcagcaaccct
caagatgctgcaagagcgatccaagaactgaatttcatgactcttaatggaaagtccatt
agggtcatgtattctcatcgtgatcctagtatccgtcgaagtggtcaaggaaacattttt
atcaagaatttggacaagtccatcgaccacaaagcactgcatgataccttttctgcattt
gggaacattctctcctgcaaggtggttaccgattcttcagggcaatcaagaggctatggg
tttgtgcaatatgacaatgaggaatctgcccagagagctatagggcaattgaatggcatg
ttgctgaacgacaagcaagtgtatgtgggacccttcctcaggaggcaagaaagagaatcc
gctgtgaacaaaacgaaattcaccaacgtgtttgtgaagaatcttgcagaatccactact
gatgatgacctgaagaatatttttggcgagtttggacagatcacaagtgctgtggtaatg
aaggatggagatgggaagtcgaagggatttgggtttgttaattttgagagcgctgatgat
gctggtaacgcagtggagtctctcaatgggaaaacgtttgatgataaggaatggtatgtt
ggtagagcgcagaagaagtctgagagagaaatggagctgaggcttcggtatgagcagaat
attaaggaagttgctgagaagtttcaaggttcaaacttgtatgtaaagaacttagatgac
agcatctccgacgagaagcttaaagaactcttctctccttttggcaccatcacatcatgc
aaggtgatgcgggaccctagtggagttaccaaaggctcaggttttgtagctttctcgact
gctgaagaggccaccaaagctatgtcggagatgaatggcaaaatgattgtaagcaaacct
ctctatgttgctattgctcagcggaaggaagacagaagggccagactgcaggcccagttt
gcccaattgaggccggtgatgccgccatctgctggtcctcgtatgccgatgtatccccca
gctggtcctggcatcggacagcagatattctatggccaagctcccccttccaccatgatt
cctcctcagcctgggttcggctaccagcagcagcttgttcctggaatgagacctggcggt
tcacccgttcccaacttcttcatgccaatggttcagccaggccagcagcgtcctggagga
agacgtggtacccagcagccagttcccatgatgcagcaacagatgcttccaaggggccgg
atgtaccggtacccacctgggcgcggaagcccggatgccccccctgccatgtctggaatg
cttccatacgaaatgaccaacatgccactgcgagagcccgtgctctctcatcagcctgtt
cctatcggagcgctggcttctgctcttgctaatgctactcccgagcagcagagaacgatg
ctgggagagaatctgtacccgatggtggagcaggtggagccggaagcggcagctaaggtg
acagggatgctgctggagatggaccagaccgaagtgctgcacctgctggagtcgccggaa
gctctcaaggccaaagtggctgaggccatggatgttcttaggagtgtttcctccggtggt
gcggttgcggccgagcagctcgcttccttgtccctcagcgacaacatcctttcttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (50)   
   KEGG ORTHOLOGY (1)   
   RefGene (46)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (66)   

Download RDF
DBGET integrated database retrieval system