KEGG   Thermosynechococcus sp. NK55: NK55_01495
Entry
NK55_01495        CDS       T02977                                 
Symbol
rpoC2
Name
(GenBank) DNA-directed RNA polymerase delta subunit RpoC2
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
thn  Thermosynechococcus sp. NK55
Pathway
thn03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:thn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    NK55_01495 (rpoC2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:thn03021]
    NK55_01495 (rpoC2)
   03400 DNA repair and recombination proteins [BR:thn03400]
    NK55_01495 (rpoC2)
Enzymes [BR:thn01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     NK55_01495 (rpoC2)
Transcription machinery [BR:thn03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     NK55_01495 (rpoC2)
DNA repair and recombination proteins [BR:thn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      NK55_01495 (rpoC2)
SSDB
Motif
Pfam: RNA_pol_Rpb1_5 RNA_pol_Rpb1_4 RPOC_hybrid RNA_pol_Rpb1_3 Biotin_lipoyl Apocytochr_F_C RPN1_C SAP30_Sin3_bdg
Other DBs
NCBI-ProteinID: AHB87673
UniProt: V5V2Q3
Position
311837..315820
AA seq 1327 aa
MTEKKPIFFNRIIDKKGLRDLIAWSFSNFGTARTAEMADKIKDLGFHYATRAGVSISVDD
LLVPPKKQELLAAAEREIKTAQERYSRGEITEVERFQKVIDTWNSTNEELKNEVVRHFRN
TDVLNSVYMMAFSGARGNLSQVRQLVGMRGLMANPQGEIIDLPIKTNFREGLTVTEYIIS
SYGARKGLVDTALRTADSGYLTRRLVDVSQDVIIREEDCETERGITLRSMTVGDKVLTLQ
DRLLGRVALNDVCHPQTGEVLVAKNQAISADIAKKIVDAGIEEVVVRSPLTCEATGSVCR
LCYGWSLAHARLVDMGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGEVARQERAPFAGT
VEYGKKLRVRPYRTRHGDDAFIVETAGKLVIKGGQQSQEFDLSQGSIVLVADGETVEAGQ
LLAEVAQASRSVRKSTEKVTKDVASDLAGQVKFVNLEVEEKRDRQGTTTRIAPKGGLIWV
LSGEVYNLPPGAEPVVQNGDRIEAGAVLAETTVKTEHGGVVRLPEQQDSKGSREVEIITA
SVMLDKAKVLKETQQGREHYIIETATGQRFSLKAAPGTKVANGQVVAELIDDRYHTTTGG
ILKYADIEVAKKGKAKQGYEVLKGGTLLWIPEETHEVNKDISLLMVEDNQYVEAGTEVVK
DIFCQNSGVVEVIQKNDILREIIIKPGELHLVDDPEAARLKHGILARPGEEVLPGLVVEA
LSQVDYLEDTPEGPAILLRPVQEFNVPDEPSVPSQDSSDNSGQSIRLRAVQRLPYKHDER
VKSVDGVDLLRTQLVLEIGSEAPQLAADIEIVTDEVDPEAQRLQLVILESLVIRRDIAAD
QTQGSTFTSLLVKDGDHIRPGAVIARTDIKAKQAGEVQGILRSGESVRRILVVTESDRLR
VQTNGAKPTVKVGDLVRPGDELAKGVTAPETAAVMAVADDHVILRLARPYLVSPGAVLQI
EEGDLVQRGDNLALLVFERAKTGDIIQGLPRIEELLEARHPKEKCVLAVRPGTCQVTYNS
DDSVDIKVIEEDGTIQEYPVLPGQNPLVVDGQKVNLADPLTDGPVDPHDILSIYFEYYKP
QGLLKAAQTSLEKVQSFLVNEVQSVYLSQGIEIADKHIEVVVRQMTSKVRIDDAGDTILL
SGELMTLRQAEQANEPMALTGGAPAQYTPVLLGITKASLNTDSFISAASFQETTRVLTEA
AIEGKSDWLRGLKENVIIGRLIPAGTGFNSYEESGNGDEEWEEGEDRLGQTHVISPEPES
PKMTTVNVTADLGEDVLIDDETAPHVIEKITGGARDFEFASSDVEDEEDELADEDDDYGD
EEEEDAF
NT seq 3984 nt   +upstreamnt  +downstreamnt
atgactgagaaaaagcctattttctttaaccgcatcattgacaaaaaaggcttgcgggac
ctgattgcttggtcctttagcaactttggcactgcccgcacagcggaaatggccgacaaa
atcaaagacctgggctttcactatgccacgcgcgccggcgtctccatcagtgttgatgac
ctgctggtgccccccaaaaaacaggaactcctcgcagcggcagaaagggaaattaaaacc
gctcaggagcgctactcgcggggtgaaatcacggaggtggaacgcttccaaaaggtcatt
gatacttggaacagcacaaacgaagaattgaaaaacgaggtggtgcggcacttccgcaat
actgatgtcctcaactccgtgtacatgatggccttctccggggcgcgggggaacctctcg
caggtgcgccagttagtgggcatgcgcggtttgatggctaatccccaaggggaaatcatt
gacctgccgattaaaaccaacttccgcgaaggtctgacggtgacggagtacattatctcc
tcctacggtgcacgcaaaggactggtggatacggcactgcggacggcggactccggttac
ctgacccggcgcttggtggatgtctcccaagatgtgattatccgcgaagaggattgtgaa
acggagcgaggcattacgctgcgcagtatgaccgtgggggataaggtcttgacgctacag
gatcgccttttgggtcgggtggccctcaatgatgtgtgccatccgcaaacgggcgaagtg
ctggtggccaaaaatcaagccatctccgctgatatcgctaagaaaattgttgatgctggt
attgaagaagtggtggtgcgatcgcccctcacctgcgaggccactggctctgtgtgtcgt
ctttgctacggctggagccttgcccatgcccgactggtggacatgggagaagcggtgggc
attattgctgctcaatccattggcgaacccggcacgcaattgacgatgcgcacgttccac
accggcggggtgtttaccggggaagtggcccgccaagagcgcgctccctttgccggtacg
gtggagtacggcaagaaattgcgggtgcgtccctaccgcactcgccacggtgatgatgcc
tttattgtcgaaaccgctggcaagcttgtgatcaaaggcggtcagcaaagtcaagaattt
gacctctcccaagggtcaattgtcctggtggcggatggcgaaaccgtcgaagcgggtcaa
ttattggcggaagtggcccaggcctcccgcagtgtccgtaagtccacggagaaagtaact
aaggatgtggcctcggatttggcgggtcaagtgaagttcgtcaacctcgaagtggaggag
aagcgcgatcgccaaggcactacaacgcgcattgcccccaagggtgggttaatttgggta
ctgtctggggaagtgtataatctgccccctggtgctgagccggttgttcagaatggcgat
cgcattgaagcgggggccgtgcttgcagaaaccactgtgaaaaccgagcatggaggtgtg
gtgcgtcttcctgaacaacaggacagcaaaggcagtcgcgaggtggaaattattaccgct
tcggtgatgctggataaagcgaaagtgctcaaggaaacgcagcagggacgcgagcactac
attattgagaccgccactggccagcgcttttccctgaaggcagctcctggcaccaaggtg
gccaatggccaagtggtggctgagctgattgacgatcgctaccacaccacgacgggcggt
atcctcaaatacgccgacatcgaagtggccaaaaaaggtaaggccaagcagggctatgaa
gtcctcaaaggggggaccctcctatggattcccgaagaaacccatgaagtgaacaaggat
atttccctgctgatggtggaggacaaccaatacgtcgaagcggggactgaggttgtcaag
gacatcttctgtcaaaacagcggtgttgtcgaagtcatccagaaaaacgacatcctgcgg
gaaattattattaagcccggtgaacttcaccttgtggatgatccggaagctgcacggcta
aagcatggcatcttggcccgtcccggtgaagaggtcctccccggccttgtggtcgaagcc
ctctcgcaagtagattatctggaggacacccccgaaggaccagcgattcttctgcgcccc
gttcaagaatttaacgttcctgatgagccatcggtacccagtcaggactccagtgataat
tcagggcagtcgattcgcctgcgggccgtgcagcggttgccctacaaacacgatgagcgg
gtcaaatccgttgatggcgttgatctgctgcggacgcagttagtccttgaaattggcagc
gaagccccacaactggctgctgacattgaaattgtcacggatgaggtggatccagaagcc
cagcgcctccaactggtgattctggagtccttggttattcgccgtgacattgctgcggat
cagacccaagggagcacctttacctcccttctggtcaaagatggtgatcacattcgcccc
ggtgctgtgattgcccgcacggacattaaagccaagcaagcgggtgaggtgcagggaatc
ttgcgcagtggtgaatctgttcgccgcattctggtcgttactgagagcgatcgcctgcgg
gtacagaccaatggtgccaagcccaccgtcaaagttggcgatctggtgcgtcctggcgat
gaactggccaaaggggtcaccgctcctgaaactgccgctgtcatggcagtggccgatgac
cacgtgatcctgcgcttggcccgtccctacctggtctcgccgggggccgtgctgcaaatt
gaagagggcgaccttgtgcaacggggggataacctcgcgctgttggtgtttgagcgggcg
aaaacgggtgacatcattcaggggttacctcggattgaagaactccttgaagctcgccat
cccaaggaaaaatgcgtactggcggtgcgccccggcacctgtcaagtcacctacaacagt
gacgacagcgtagacatcaaagtcattgaagaggatggcacgattcaggaataccctgtc
ttgccgggccaaaaccccttggtggtggatggtcaaaaggtcaatcttgctgaccccctc
accgatggtcctgtggatccccacgacatcctctcaatttactttgagtactacaaaccc
caagggttgctcaaagctgcccaaactagccttgagaaggtgcaatccttcttggtcaac
gaggtgcagtcggtgtatctcagccaaggtattgagattgccgataaacacattgaggtg
gttgtccgccagatgacctccaaggttcggattgacgatgcgggcgatacaatcctgctc
tccggtgaactcatgactctgcgtcaggcggaacaagccaacgaacccatggcgcttacc
ggtggtgcacccgcccaatatacccctgttctgttggggattaccaaggcctccctgaat
accgatagcttcatttcagccgccagtttccaagagacgacccgggtactcactgaagcg
gccattgaaggtaagtccgactggctgcggggactcaaggaaaacgtgatcattggccgt
ctcatcccagcgggtaccggcttcaacagctacgaggaaagtggcaacggcgatgaagag
tgggaagagggtgaagatcgcttgggccaaacccacgttatcagccccgaacctgaatca
ccaaagatgacgacggtcaatgtgactgctgaccttggtgaagatgtcctcattgatgat
gaaaccgcaccccatgtgattgaaaagattacgggaggggctcgcgattttgaattcgcc
agcagtgatgttgaggatgaggaggacgaactcgcagacgaggacgatgactatggggat
gaagaggaggaggatgccttctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

Download RDF
DBGET integrated database retrieval system