KEGG   Thioalkalivibrio sp. K90mix: TK90_2000Help
Entry
TK90_2000         CDS       T01174                                 

Definition
formamidopyrimidine-DNA glycosylase (EC:3.2.2.23)
Orthology
K10563  
formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
tkm  Thioalkalivibrio sp. K90mix
Pathway
Base excision repair
Brite
KEGG Orthology (KO) [BR:tkm00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    TK90_2000
Enzymes [BR:tkm01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     TK90_2000
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     TK90_2000
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
JGI: 
UniProt: 
Position
2124795..2125610
Genome map
AA seq 271 aa AA seqDB search
MPELPEVETTRRGLSPLLEGQTIEWLEVRNGRLRWPVPEELPGRLAGARITTLARRAKYL
LLNTDRGGALLHLGMSGSLRHCMPGVPLRTHDHLILHLTNGAQVRFHDPRRFGCCLPLPE
TGEPHPLLAALGPEPLDATFNGDHLFRRSRGRRGPIKAFIMDQDVVVGVGNIYATEALFL
AGIRPGRAAGRVTRAEYERLAGFIRTVLGAAIEQGGTTLRDFLREDGTHGYFRQSLRVYG
RAGEPCLECATPLRNRRIGQRASAYCPTCQR
NT seq 816 nt NT seq  +upstreamnt  +downstreamnt
atgcctgagctccccgaggtcgagaccacccggcgcgggctgtcgcctcttcttgaaggc
cagactatcgaatggctcgaggtacgcaatgggcgcctgcgctggcccgtaccggaggaa
ttgcccgggcgtctggccggggcccgcatcacgacactggcgcgacgcgccaaatacctg
ctgctgaacaccgatcgtggcggggcactattgcatcttggcatgtccggctcgctgcgc
cactgcatgccgggcgtcccgctgcgcacgcacgatcacctgatcctgcatctgacgaac
ggcgcgcaggtgcgctttcatgatccgcgccgctttggatgttgcctgccgctgccggag
accggcgagccacatcccctgctggccgcactggggccggagcccctggacgccacattc
aacggcgaccacctgttccgccgcagccgcgggcgccggggtccgatcaaggccttcatc
atggatcaggatgtcgtggtcggcgtgggcaacatctatgcgaccgaggcgctgttcctg
gccggaatccgtccggggcgggccgccgggcgcgtgacccgggcggaatacgaacgactg
gccggattcatccgcaccgtgctgggcgcggcgatcgaacaaggcggcacgaccctgcgc
gacttcctgcgcgaggacgggacccacgggtactttcgccagtcactgcgggtctacgga
cgcgccggagagccgtgcctggagtgtgcgacaccgctgcgcaaccgacgcatcgggcag
cgcgcctcggcgtactgcccgacctgccaacggtag

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