KEGG   Thioalkalivibrio sp. K90mix: TK90_2000
Entry
TK90_2000         CDS       T01174                                 
Name
(GenBank) formamidopyrimidine-DNA glycosylase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
tkm  Thioalkalivibrio sp. K90mix
Pathway
tkm03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:tkm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    TK90_2000
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tkm03400]
    TK90_2000
Enzymes [BR:tkm01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     TK90_2000
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     TK90_2000
DNA repair and recombination proteins [BR:tkm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     TK90_2000
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH zf-FPG_IleRS Auto_anti-p27
Other DBs
NCBI-ProteinID: ADC72491
UniProt: D3SBZ1
Position
2124795..2125610
AA seq 271 aa
MPELPEVETTRRGLSPLLEGQTIEWLEVRNGRLRWPVPEELPGRLAGARITTLARRAKYL
LLNTDRGGALLHLGMSGSLRHCMPGVPLRTHDHLILHLTNGAQVRFHDPRRFGCCLPLPE
TGEPHPLLAALGPEPLDATFNGDHLFRRSRGRRGPIKAFIMDQDVVVGVGNIYATEALFL
AGIRPGRAAGRVTRAEYERLAGFIRTVLGAAIEQGGTTLRDFLREDGTHGYFRQSLRVYG
RAGEPCLECATPLRNRRIGQRASAYCPTCQR
NT seq 816 nt   +upstreamnt  +downstreamnt
atgcctgagctccccgaggtcgagaccacccggcgcgggctgtcgcctcttcttgaaggc
cagactatcgaatggctcgaggtacgcaatgggcgcctgcgctggcccgtaccggaggaa
ttgcccgggcgtctggccggggcccgcatcacgacactggcgcgacgcgccaaatacctg
ctgctgaacaccgatcgtggcggggcactattgcatcttggcatgtccggctcgctgcgc
cactgcatgccgggcgtcccgctgcgcacgcacgatcacctgatcctgcatctgacgaac
ggcgcgcaggtgcgctttcatgatccgcgccgctttggatgttgcctgccgctgccggag
accggcgagccacatcccctgctggccgcactggggccggagcccctggacgccacattc
aacggcgaccacctgttccgccgcagccgcgggcgccggggtccgatcaaggccttcatc
atggatcaggatgtcgtggtcggcgtgggcaacatctatgcgaccgaggcgctgttcctg
gccggaatccgtccggggcgggccgccgggcgcgtgacccgggcggaatacgaacgactg
gccggattcatccgcaccgtgctgggcgcggcgatcgaacaaggcggcacgaccctgcgc
gacttcctgcgcgaggacgggacccacgggtactttcgccagtcactgcgggtctacgga
cgcgccggagagccgtgcctggagtgtgcgacaccgctgcgcaaccgacgcatcgggcag
cgcgcctcggcgtactgcccgacctgccaacggtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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