KEGG T00226: TK2140

Thermococcus kodakaraensis: TK2140

Entry

TK2140 CDS T00226

Definition

ATP-dependent DNA ligase (EC:6.5.1.1)

Orthology

K10747

DNA ligase 1 [EC:6.5.1.1]

Organism

tko Thermococcus kodakaraensis

Pathway

tko03030	DNA replication
tko03410	Base excision repair
tko03420	Nucleotide excision repair
tko03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; DNA replication [PATH:tko03030]
Genetic Information Processing; Replication and repair; Base excision repair [PATH:tko03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:tko03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:tko03430]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DNA_ligase_OB_2 Peptidase_S7 UCR_UQCRX_QCR9 TPR_1

Other DBs

NCBI-GI:

57642075

NCBI-GeneID:

3235455

UniProt:

Q9HHC4

Position

complement(1918057..1919745)

AA seq 562 aa
MSDMRYSELADLYRRLEKTTLKTLKTKFVADFLKKTPDELLEIVPYLILGKVFPDWDERE
LGVGEKLLIKAVSMATGVPEKEIEDSVRDTGDLGESVALAIKKKKQKSFFSQPLTIKRVY
DTFVKIAEAQGEGSQDRKMKYLANLFMDAEPEEGKYLARTVLGTMRTGVAEGILRDAIAE
AFRVKPELVERAYMLTSDFGYVAKIAKLEGNEGLSKVRIQIGKPIRPMLAQNAASVKDAL
IEMGGEAAFEIKYDGARVQVHKDGDKVIVYSRRLENVTRSIPEVIEAIKAALKPEKAIVE
GELVAVGENGRPRPFQYVLRRFRRKYNIDEMIEKIPLELNLFDVMFVDGESLIETKFIDR
RNKLEEIVKESEKIKLAEQLITKKVEEAEAFYRRALELGHEGLMAKRLDSIYEPGNRGKK
WLKIKPTMENLDLVIIGAEWGEGRRAHLLGSFLVAAYDPHSGEFLPVGKVGSGFTDEDLV
EFTKMLKPYIVRQEGKFVEIEPKFVIEVTYQEIQKSPKYKSGFALRFPRYVALREDKSPE
EADTIERVAELYELQERFKAKK

NT seq 1689 nt +upstreamnt +downstreamnt
atgagcgatatgcgctactctgaactggccgatctctatagacggctcgaaaagaccacg
ctcaagaccctgaagacaaagttcgttgccgattttttaaaaaagactccagacgagctc
cttgagatagttccatacctaatcctcggaaaggtctttcccgattgggacgagagggag
ctaggcgtgggagagaagctcctaataaaagctgtctctatggcaacgggagtccccgaa
aaggagatagaagactccgttagggacactggcgacctgggagagagcgttgctttggcc
ataaagaaaaagaagcagaagagcttcttctcacagccgctcacgataaagcgtgtttac
gacacctttgtcaagatagcggaggcccaaggcgaaggaagccaggacaggaagatgaag
tacctcgccaacctcttcatggacgctgaaccggaggaaggcaagtacctggcgaggacg
gttttggggacgatgcgcactggagtcgctgagggaattcttagggatgcaatagctgaa
gccttcagggtgaagccagagctcgttgagagggcttacatgctgacgagcgacttcgga
tacgttgccaagatagccaagctcgagggcaacgaggggctctcaaaggtcaggatacag
ataggcaagccgatcaggccgatgcttgcccagaacgcggccagtgttaaagatgccctc
atcgagatgggtggggaagcggccttcgagataaagtacgatggcgcgagagtacaggtg
cacaaggacggggacaaagtcatcgtgtattccagaaggcttgagaacgtcacgagatca
atcccagaagtcattgaggccataaaagcggccctgaagccagagaaagccatagtcgag
ggagaacttgtcgcagttggagaaaatggacggccaaggcccttccaatacgtgcttagg
cgcttcaggaggaagtacaacatcgacgagatgatagagaagataccgctcgaactgaat
ctcttcgacgtcatgttcgttgacggcgagagcctgatagagactaagttcatcgacagg
aggaataagcttgaagaaatagtgaaggagagcgagaagataaagctcgccgaacagctt
ataacaaagaaagttgaggaagcggaggccttctacaggagagcacttgagctcggccat
gaggggcttatggcaaagaggcttgattccatctacgaaccggggaacagaggcaagaag
tggctcaagattaagcccacgatggagaacctcgatctcgtcatcatcggtgcagagtgg
ggagagggaaggagggcccatctgcttggttcgttcctcgttgctgcctacgacccgcac
agcggcgagttcctgcctgtgggtaaagtcgggagcggcttcacagacgaggacttggtc
gagttcacgaagatgctcaagccatacatagtacgccaggaaggcaagttcgtcgagata
gagccgaagttcgtcattgaggtcacctaccaggagatacagaagagcccgaagtacaag
agcggcttcgccctgagattcccgcgctacgtcgcccttagggaagacaaaagcccagaa
gaggccgacacaattgaaagggtggcggagctctacgagctccaggagaggttcaaggcg
aagaagtga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (19)   

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