KEGG   Thermococcus litoralis: OCC_06519
Entry
OCC_06519         CDS       T02800                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
tlt  Thermococcus litoralis
Pathway
tlt03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tlt00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    OCC_06519
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tlt03019]
    OCC_06519
Messenger RNA biogenesis [BR:tlt03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     OCC_06519
SSDB
Motif
Pfam: RMMBL Lactamase_B Lactamase_B_2 Lactamase_B_6 PDEase_II
Other DBs
NCBI-ProteinID: EHR79029
UniProt: H3ZLY7
Position
95802..97124
AA seq 440 aa
MIKVYTLGGYEEVGKNMTAVEYEGEVVIIDMGIRLDRVLIHEDVNFQQMSSRDLRKLGAI
PDDSSLKNKKVVAIALSHGHLDHIGAIAKLAPHYPNVPIYGTPYTIKLAKGEVRSEQYFE
VTNPMYETQYGEIVQVSENLAIEFVQITHSIPHSSMVVIHTPEGAVVYACDYKFDNHNPL
GEKPDYKRLKEIGQEGVKILIPESTRAAEETKTPSEASAKLLLEDFFYYEGMEEKGLITT
TFASHIARLQELIEIANNMGRQAVLVGRSLAKYTGIAKQLGLIKMKGAKAVRSPNAVQKT
LREVSQARENYLLIVTGHQGEPGAVLTRMANGELYDIGKDDTVVFSAGVIPNPLNIAQRY
ALETKLRMRGVRMVKDLHVSGHASREDHRYLIKLLNPENIIPAHGEFRMLTHYAELAEEE
GYLIGRDVFVSRNGYKVDVR
NT seq 1323 nt   +upstreamnt  +downstreamnt
atgataaaagtttacacgctaggtggttacgaggaagtaggaaaaaacatgactgccgtg
gaatatgaaggagaagttgtgattattgatatgggaatcaggcttgatagggttcttatc
catgaggatgttaactttcagcagatgagttcgagggatttaagaaagttgggtgcaatc
cccgatgattcctctctcaaaaacaaaaaagtcgttgccattgcactttctcacggtcat
ctcgatcacataggagctatagcaaagcttgctccccactatccaaacgttccaatctat
ggaactccctacacaataaagctggcaaaaggagaggtgaggagtgagcagtattttgag
gttacaaacccgatgtatgagacccagtatggggagattgttcaagttagcgagaattta
gctatagagtttgttcagattacccactcaatcccgcactcctcaatggtggttatccat
acgcccgaaggtgctgtagtttatgcgtgtgattataagtttgacaaccacaatcccctt
ggagagaagccagattacaagaggctcaaggagataggccaagaaggagtaaaaattttg
ataccagaatccacgagggcagctgaagaaacaaaaacgccaagtgaagcctctgcgaag
cttctcttggaggactttttctactatgaagggatggaagagaaaggactaatcaccacg
acctttgcctctcacatagcccgtctgcaagagctgatagagatagcaaacaatatgggg
aggcaagcggttttggtaggtagatctctagcaaagtacacaggcatagcgaaacagctc
ggtctaataaaaatgaaaggggcaaaagcggtgagaagcccaaatgctgttcagaaaaca
ctcagagaggtttctcaagctagggagaactatctcctaatagtcacaggtcatcaaggt
gagccgggagcagtgcttacaaggatggctaatggagaactctatgacatcggaaaagac
gacactgttgtgttttcggctggagtcatcccaaatcccctaaacatagcccaacgctat
gcccttgagacaaagctcagaatgagaggagtgagaatggttaaagatttacacgtctca
ggtcatgcaagcagggaagaccacagatatttgattaagcttttaaatccagagaatata
atccccgctcatggagagtttaggatgctcacccattatgctgagcttgccgaagaagag
gggtatctcataggaagggacgtgtttgtatcaagaaacggttacaaagtcgatgtgagg
tga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (13)   

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