KEGG T.maritima: TM0458

Thermotoga maritima: TM0458

Entry

TM0458 CDS T.maritima

Gene name rpoB

Definition DNA-directed RNA polymerase subunit beta

Orthology K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]

Pathway tma00230 Purine metabolism
tma00240 Pyrimidine metabolism
tma01100 Metabolic pathways
tma03020 RNA polymerase

Class Metabolism; Nucleotide Metabolism; Purine metabolism [PATH:tma00230]
Metabolism; Nucleotide Metabolism; Pyrimidine metabolism
[PATH:tma00240]
Genetic Information Processing; Transcription; RNA polymerase
[PATH:tma03020]
Genetic Information Processing; Replication and Repair; DNA repair
and recombination proteins

SSDB

Motif Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7
RNA_pol_Rpb2_45 RNA_pol_Rpb2_2
PROSITE: RNA_POL_BETA

Other DBs NCBI-GI: 15643224
NCBI-GeneID: 897488
JCVI-CMR: TM0458
UniProt: P29398

Position 478393..482184

AA seq 1263 aa
MKEISCGRRTRVSFGKSREPLPIPDLVEIQKSSYRRFLEEGLLEVLKKFSPIYSQATRSD
LRKSDRGFALEFVSTRTGEPAIDPLECKAKGLTYSVPIYATARLTDMKSGEMKEEEVFLG
YIPYMTDRGTFIINGAERVVVNQIVVSPGLYFSSEYIDREEYGGYFLPSRGAWLEVILDP
YDGVLYAGLDGKKVNLFLFLKTIGYEKDEDILSLYPTYLDADDEDSLLLHVGSILLEDIY
DGGRKIAEKWDILTKDLAERILMIDDINQIKIVHPIAQNTFEKMLEVVSSSSEEGEEEEE
KTKIYGLNEVTVVDAYLEIFRRLRPEELPRINAAKRYLHDLFFNPERYDLSEVGRYKVNE
RLRNAYIRYLIEVEGEDPEEARKKVYNETSLVLKPLDIVLASRILFDYFERRYVNDFEID
SYELKNLIRIFKEEYLEKRKTAPYDLRKLVSVFRRNYGVTSDLGVFAAIRYVSNINKELP
SIPFDTKDHLGNKRVRTVGELVQREFERLFARAQKAIQERLTLINSLSKVSIQSLINIKS
IISTVNQFFAMNQLSQFMDQVNPLSELTHKRRVSAVGPGGLRRESKVFEARNVHYSQYGR
LCPIETPEGANIGFITSLAIYAKIDEYGFLMTPYRKVVNGKVTDEVVYLRANEEEEYKII
PATTPVDEEGNIIPERVVARMGEDIRLVPKEEVDFMDVSTKQPFSVSASLIPFLEHDDAS
RALMGSNMQRQAVPLLKTEAPLVGTGMEWEAAKNSGYVILAEHDGIVKEVDAARVVVHRT
DENGNLMYDDKGNPVVDEYRLLKFVRSNQDTMINQKPIVNEGDFVKKGDPIADGPATDMG
ELALGRNILVAFMPWEGYNYEDAILVSQELLEEDVFTSIHIEVYETQARETRLGPEEITA
DIPNVSKELLKNLDENGIIRVGAYVVSDYGVGSQAILVGKVTPKGEGDTTPEEKIIRSVF
GERGRDVKDTSLRLPHGVEGRVIRVDVYDQNDIAELGAGVLKLVRVYVASRKTLDIGDKL
AGRHGNKGVVSNILPKEDMPFLPDGTPVQMVLNPLGIPSRMNVGQILETHLGWLAKLTGK
WFATPVFEGAKEDEILRPLYEERKKRGLHLGDDENNPNGKVVLRDGRTGEPFDNPVVVGY
MYMLKLIHIAKEKIHARSTGPYSLIHQQPLGGKSHFGGQRLGEMEVWALEAYGAAHTLAE
MLTIKSDDIKGRNEAYKAILKNMNIPEPGVPESFRVLIKELRGLALDVRLYDENGNEIDI
DKY

NT seq 3792 nt +upstreamnt +downstreamnt
atgaaagagatctcttgcggtaggaggacgagggtttctttcggcaagagccgagagccc
ctgccaattccagacctcgtggagatccagaagagttcctaccgaagattcctcgaagaa
ggtttgcttgaagtcctcaagaaattttctcccatttattcgcaggcgacccgctcagat
ttgagaaaatcagacagaggatttgctctcgagtttgtttcaaccagaactggagaacct
gccatcgatccccttgaatgtaaagcgaagggtctaacctacagtgttccgatatatgcg
acggctcgccttaccgacatgaaaagcggtgagatgaaggaagaagaagtgttccttggc
tacattccctacatgacggatcgtggaacgttcataataaacggagcagaaagggttgta
gtcaatcagatagtggtttccccagggctttacttctcgtctgagtacatagacagagaa
gaatacggcgggtactttctcccttctcgaggtgcatggctcgaagtcatcctcgatccc
tacgatggagttctttacgcgggccttgacggaaagaaggtcaaccttttcctctttctg
aaaacgatcggttacgaaaaagatgaggatatcctctccctttatcccacctatctggat
gccgacgatgaagacagtctcctgctccacgtgggctccattctgctcgaagacatctac
gatggtggcaggaagatcgctgaaaaatgggatatcctgaccaaagatctcgcggaaagg
attctgatgatagatgacataaatcagataaaaatagttcatccaatagctcaaaataca
tttgaaaagatgctggaagtggtgtcttcctcgagcgaagagggagaggaagaagaggaa
aagacaaagatttacggtttaaacgaagtcaccgttgtggacgcatatctggaaattttc
aggagattgcgacccgaagaacttccaagaataaacgcggcaaaaaggtatctgcacgac
ctcttcttcaatccggaaaggtacgatctttccgaggtgggaagatacaaagtcaacgaa
agactcagaaacgcttacatcaggtacctcatagaggttgaaggggaagatcccgaagag
gcgaggaagaaggtttacaacgaaacttctctcgttctgaaaccacttgatatagtcctc
gcttccagaattctcttcgactactttgagagaagatatgtcaacgattttgaaatagat
tcctacgagttgaagaatctgatcagaatcttcaaggaagaatacttggaaaagagaaaa
acggctccctacgatctcagaaaacttgtatctgtgttccggagaaattacggagtaaca
tctgatctcggtgtgtttgctgctatcaggtatgtttccaacataaacaaagagcttcct
tcgatacctttcgatacgaaggatcacctcgggaacaaacgtgttagaaccgttggagaa
ctcgttcagagagagttcgagagattgttcgcaagggcgcagaaggccattcaggaaaga
ctcacactcataaactctttgagtaaggtttccattcagagccttataaacataaaatcc
atcatatcaacggtcaaccagttcttcgcgatgaaccagctttctcagttcatggatcag
gtgaatcctctgtcggaactcactcacaaaagaagggtttctgctgtcggacccggtgga
ttgagaagagaatccaaagtcttcgaagcaagaaacgtgcactactctcagtacggaagg
ctgtgtcccattgaaacacccgaaggcgcgaacataggattcataacatctctggctata
tacgctaaaatcgatgaatacggatttctcatgactccttatagaaaggtagtcaatgga
aaagtaacggatgaagtggtctatctgagggccaacgaagaagaagagtacaaaatcata
cctgccaccacacccgtggatgaagagggcaacataataccagagagagtagtggctcga
atgggtgaagatatcaggcttgttcccaaagaagaagtagatttcatggatgtatcgacg
aagcaacccttcagtgtctcggcttcactcattccgttcctcgaacacgacgacgccagc
cgagccctcatgggttcgaacatgcagaggcaggccgtcccacttctgaaaacagaagca
cccctcgttggaactggaatggaatgggaagcagcgaaaaattctggttatgttattctc
gcagaacacgatggaatagtgaaagaggtcgacgctgccagagttgttgttcacagaacg
gacgagaatggaaatctcatgtacgacgataaaggcaatccagtggttgatgaatacaga
cttctaaagtttgtgagatccaaccaggatacgatgataaatcaaaaacccatcgtgaac
gaaggcgattttgtgaagaagggtgatcccatagccgacggtccggcaaccgacatggga
gaactggcacttggaaggaacatcctcgttgccttcatgccatgggaaggttacaactac
gaggacgccatccttgtgagtcaggagcttctcgaagaagacgtcttcacatcgatccac
atagaagtttatgaaactcaagcaagagaaacgaggctcggtcctgaagagatcaccgct
gatataccgaacgtgagcaaagaacttctgaaaaatctcgatgagaacggaatcatcaga
gttggagcgtacgttgtgagtgactatggagtgggttctcaggcgatactggttggaaaa
gtgacgccgaaaggcgaaggagacacaacacccgaagaaaagatcatcagatccgttttt
ggtgaacgcggaagagacgtgaaggatacatctctcaggctgcctcacggggttgaggga
agagttataagggtcgatgtttacgatcaaaacgatatagcagaactgggagcgggagtt
ttgaaactcgtcagggtgtacgttgcctcaagaaagacgctcgacatcggagacaaactc
gcaggacgccacggaaacaaaggagtcgtttcaaacatacttccaaaagaagacatgccg
ttcctacccgatggaacaccggttcagatggtactgaacccgctgggaataccttcacgt
atgaacgtcggtcagattctggaaacgcaccttggatggctcgccaaactaactggaaaa
tggttcgcaactcctgtgttcgaaggggcgaaagaagacgaaattctcagaccgctctac
gaagaaaggaagaagagaggccttcaccttggagacgacgaaaacaatccgaatggaaaa
gtggttctcagagatggaagaacgggagaacccttcgacaatcctgtggtggttggttac
atgtacatgctgaaactcatccatatagccaaagaaaagattcacgcaaggtccacagga
ccgtactctctcattcaccagcagcctctcggtggaaagtctcacttcggtggacagagg
cttggagaaatggaggtctgggctctggaggcctatggagctgctcatactcttgcggag
atgctcaccataaaatccgacgacataaaaggaagaaacgaagcctataaagccatactg
aagaacatgaatatacctgaacctggtgttcccgaaagctttagggttctcatcaaagaa
ctcagaggtctcgcgctcgatgtgagactctacgatgagaacggtaacgagatagatatc
gacaagtactga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   JCVI-CMR (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (6)   
   PROSITE (1)   
All databases (22)

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