KEGG T.maritima: TM0459

Thermotoga maritima: TM0459

Entry

TM0459 CDS T.maritima

Definition DNA-directed RNA polymerase, beta' subunit

Orthology K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]

Pathway tma00230 Purine metabolism
tma00240 Pyrimidine metabolism
tma01100 Metabolic pathways
tma03020 RNA polymerase

Class Metabolism; Nucleotide Metabolism; Purine metabolism [PATH:tma00230]
Metabolism; Nucleotide Metabolism; Pyrimidine metabolism
[PATH:tma00240]
Genetic Information Processing; Transcription; RNA polymerase
[PATH:tma03020]
Genetic Information Processing; Replication and Repair; DNA repair
and recombination proteins

SSDB

Motif Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_5 RNA_pol_Rpb1_3
RNA_pol_Rpb1_4 Apocytochr_F_C Peptidase_M23 Biotin_lipoyl
PROSITE: NLS_BP

Other DBs NCBI-GI: 15643225
NCBI-GeneID: 897490
JCVI-CMR: TM0459
UniProt: P36252

Position 482201..487273

AA seq 1690 aa
MPMSSFKRKIKAIQIKIASPEVIRSWSGGEVKKPETINYRTFKPERDGLFCERIFGPVKD
YECACGKYKGKKYEGTVCERCGVRVESREARRKRMGHIELAAPAVHIWYLESIPSVLGTL
LNMSTSDLENIIYYGSRRVIERAFIVTDPKDTPFSQGDVIYETEYRIYRKKWDFDVEQAF
VVKNPKSPVLSDIDGEVTLKTEKSITGREITWIIVKNITRATHTVLPGMILVVKDGQEVE
KGQDLTKEMTIDPVYAPFDGHVEIDELSNTITLKPLTTSKDQPVVFTIPYGAKILVSNGQ
KVKKGDQITTSTSLPAVKASISGTVRFGSNLNIRALEDGNFEVLSTGEVYVEQVIEERKY
PVFEGALVYVNNGDQVKKGDHLADRFLFEEEYLSATEYKIFESHYPTMFDVEERTENDRP
IVVITDIDPEVSKETGLKVGDIVTENEYEAYLQIYPEKIVADAGAQAIKKLLQNLDLEAL
QAEIEAELKKLPSSSSKAIKLRRRLKMVKDFLKSGNKPEWMVLEVVPVIPPDLRPMIQIE
GGRFATTDLNELYRRLINRNNRLKKLLELGAPEIILRNEKRMLQEAVDALIHNGSDSEGK
RSRRAVLKDRNGRPLKSLTDLLKGKKGRFRRNLLGKRVDYSGRAVIVVGPNLKIHQCGIP
KKMAMELFKPFVLAKLLGEGSSSKTMRKVKKAIIEKEMPEAWEVLEEVIKGSVVLLNRAP
TLHRMSIQAFEPKLVEGNAIQLHPVVCPPFNADFDGDQMAVHVPLSAAAQAEARFLMLSR
YNIISPAHGKPISLPTQDIIIGSYYLTTVGKEFDSLKEEDVKWKFSSPEEAMLAYHLGFI
KLHTPILIKVAVNGEEKRIKTTLGRVIFNGILPEDLRDYNRIFDKKQINALVYETFKRHG
IDRAADLLDDIKDIGFHYATVSGLTLSLKDLKIPPERDEILRKTWEKVRIIEENYEKGFL
TEEQRKSEIIRLWMSVTEEITKLTSKTLAEDPFNPIYMMVNSGARGNIDQVKQLAGIRGL
MIKAYDPRSREIKSKIFKGQAIHEALTFDYPVDKNLREGVDILQFFISTYGARKGQVDTA
MNTSFAGYLTRRLVDVAQSVTVAEPDCGTHEGIRAMDLIKEGTVVEKMNEFLFGRVLARD
VLDPETKEVLKNPETGKEYTRNTMLTDDDANFLASYKKMVDVVRYEEIDITELSLPNMYA
EIAEPVGEYEEGTELTWDVIKAAKNEGKYRIKVKVYPVVGTVYAEEEPLYDKKGERQLLV
YQEVINEIVAKMLEENGIEKVSVRPDIIVRSPLTCESEYGVCAACYGMDLSNHKIVNVGE
AVGVVAAQSIGEPGTQLTMRTFHVGGVMGASDIVSGLTTVEKTFEPYAFLREEKSGGKKE
IRKYYGSEAILCEVDGFVKDIATDESGRTVIYIEDYAGNIHAYKVPKRAKVRVEKGQKVL
RGETLTSGAIVWWKLLELESEKGVMTAMNLLKIIKNAYVQQGVSIHDKHFEIIFKQMLSM
ATIVDPGDSDYLPDQLVPLVDIKRFNREILEGNAKVEENRKWVIGKTLAKRIITETEEGE
LVELAQKGDEVTEELLKKIIEAGIKEIDVFEKDKVVTYQILPKEPIKYKRRLLSLKKAAL
NYPGWLSAAAFEETAWVLTAAAIEGKVDPLIGLKENVIVGQLIPAGTGLDVFAGIQVEET
PRAAVEEELA

NT seq 5073 nt +upstreamnt +downstreamnt
atgccaatgtcctctttcaagaggaagataaaggcaattcagataaagatagcctctccg
gaagtgataagaagctggtctggaggagaggtcaagaaaccagaaacgatcaactacagg
acattcaagcccgagagagacggccttttctgtgagaggatttttggtcctgtgaaggac
tacgaatgtgcctgtggtaagtacaaggggaagaaatacgaaggtaccgtctgtgaaagg
tgtggagtcagggtcgaatccagagaagccagaagaaaaagaatgggacacatagaactg
gcagcacccgctgtgcacatctggtatctcgagagcataccgagtgttctcggaacactc
ttgaacatgagcacttcagacctggaaaacatcatctactacggcagtcgccgtgtcata
gaaagagcttttattgtgactgatcccaaagatactccgttctcccagggggatgtgatc
tacgagaccgagtacaggatatacagaaaaaagtgggatttcgatgttgaacaggcgttt
gtggtgaagaatccaaaatctcctgttctttccgatatcgatggagaagtgactttgaag
acagaaaagtccatcacaggaagggaaatcacctggatcattgtgaagaacatcaccaga
gccacacacacggtgctccctggaatgattctcgttgtgaaagatggccaagaagtggaa
aaaggacaggatctgacaaaagaaatgacaatcgaccctgtttacgctccgtttgacggt
cacgtggaaatagatgaactttcgaatactattacgttgaaacctctcacaaccagtaag
gatcagccggttgttttcacgattccttatggagcgaagattcttgtttcgaacggccag
aaggtgaaaaaaggtgatcagatcacgacttctaccagcctcccagccgtcaaagcgagc
atatctggtacagtgagatttggttccaacctcaacataagagcacttgaagacggaaac
ttcgaagtcctttccaccggtgaagtctatgtagaacaggttatagaggagagaaaatat
cctgtctttgaaggagcgcttgtctacgttaacaacggcgaccaggtgaagaaaggagat
cacctggctgacagattcctcttcgaggaagaatacctctctgccaccgagtacaaaatc
ttcgagtcgcactatccaaccatgttcgatgttgaagagagaacggaaaacgacagaccg
attgtggtcataacggatatagatcccgaggtttccaaagaaacgggtttgaaggttggc
gatatagtcacagaaaacgagtacgaagcataccttcagatctatccagaaaagatagtg
gctgatgccggggcacaggcgataaagaaactgcttcagaatctggatctggaagcgctt
caggcagaaattgaagcggaactcaaaaagttaccttcttccagctcgaaggcgataaag
ctcagaagaaggttgaagatggtaaaggatttcctgaaatctggtaacaaacccgaatgg
atggttcttgaggttgttcctgtgattccacccgacctcaggccgatgatacagatcgag
ggaggaaggttcgccacaacagacctcaacgaactttacagaagactcataaacagaaac
aacagactcaaaaagcttctggagctcggggcacctgagatcattctgagaaacgagaaa
agaatgcttcaagaagcggttgacgctctcattcacaacggttctgattcggaaggaaag
agaagcagaagagccgttttgaaagatagaaacggtaggcctctgaaatcgctcaccgat
ctactgaaaggaaagaaaggaagattcagaaggaacctgcttggaaagcgtgtggattac
tctggaagagcggttattgtcgtgggcccaaatctgaagatacaccagtgcggtattcca
aagaaaatggcaatggagctcttcaaaccgtttgttctggcgaaactccttggagagggt
tcttccagcaaaaccatgagaaaggtcaagaaagcgatcatagaaaaagagatgccggaa
gcctgggaagtgcttgaagaagtgataaagggaagcgtcgttcttttgaacagagctccc
acactccacaggatgtcaattcaggcgtttgaaccaaaactcgttgaaggaaacgccata
cagctccatcctgtcgtgtgtccaccattcaacgcggattttgacggtgaccagatggcg
gttcatgtaccgctttcggccgcggcgcaggcagaggcaagatttctcatgctttcgaga
tacaacatcatctccccagcacacgggaagccgatttcgctgccgacgcaggatatcatc
ataggttcttactacctcacaacagttggtaaagaattcgactcactgaaagaagaagat
gtgaaatggaagttctcttcgcccgaagaggcgatgctggcttaccaccttggattcata
aaacttcacactccgattctgataaaggttgctgtcaacggcgaggaaaaacgaataaag
acgactctgggaagagtgatcttcaacggcattctcccggaagatttgagggattacaat
agaattttcgacaaaaaacagataaacgctctcgtctatgaaacgttcaagagacacggt
atagacagagctgcggatctcttggatgacataaaagacatcggtttccactacgcaacc
gtttccggtctgactctctcgttgaaagatctgaagataccaccagagagagatgagatt
ctcaggaagacctgggagaaggtcagaataatcgaagagaattacgaaaagggcttcctg
acggaggaacagagaaagagtgaaatcatacgactctggatgagtgtgacggaggagatc
acaaaactcacatccaaaacgctcgcagaggatccgttcaaccccatatacatgatggtg
aactctggtgctagaggtaacatagatcaggtgaaacagctcgccggtatcagaggtttg
atgatcaaggcgtacgacccaagatccagggaaataaagtccaagatcttcaagggtcag
gcgatccacgaagcactcacattcgattacccggtcgataagaacctcagagaaggtgtt
gacatcctgcagttcttcatttccacctacggtgccagaaaaggacaggttgacacagca
atgaacacatcctttgcgggatatctgacgaggcgtcttgtggatgtagcccagagcgtt
acagtggcggaacccgactgtggaacacatgagggaatcagagccatggatctgataaaa
gaaggaacagtcgtggaaaagatgaacgagttcctcttcggtagagtgctcgcaagggac
gtgcttgatccagaaacaaaagaagttttaaagaatccagaaacgggcaaggaatacacg
agaaacaccatgctcacagacgacgatgcgaacttcctggcttcttacaagaaaatggtt
gacgttgtgaggtacgaagagatagacataacagaactctcactccccaacatgtacgcc
gagatagcagaacccgttggagagtacgaagaaggaacggaactcacctgggatgtgata
aaagctgctaagaacgaagggaaataccgcataaaggtgaaggtctatcctgtcgttgga
actgtttacgcggaagaggaacctttgtacgataaaaaaggtgaaagacagcttctcgtg
taccaggaagtgataaacgagatcgtggcgaagatgctcgaagaaaatggaatagaaaaa
gtttccgtgagacccgatatcattgtgagatcgcctctcacctgtgagtccgagtacggc
gtctgcgctgcctgttacggtatggatctttccaaccacaagatagtgaacgtcggagaa
gcggtgggagttgtggccgctcagtccataggagagcccggcacacagctcacgatgaga
acattccacgttggaggagtcatgggtgcgagcgacatcgtcagcggtctcacaactgtg
gagaagacgttcgaaccgtacgcgttcttgagagaagaaaagagcggtggaaagaaagaa
atcagaaaatactatggatccgaagccattctgtgtgaggtcgatggtttcgttaaagac
atagcaaccgatgaaagtggtagaacggtgatttacatcgaggattacgccggtaacatc
cacgcttacaaagtaccgaagagagcgaaagtaagggtagaaaaaggccagaaagtcctg
agaggagaaaccctcaccagcggcgccattgtgtggtggaaactcctggagctcgaatca
gaaaaaggtgtaatgacggcgatgaatctgctgaagatcataaagaacgcctacgtccag
cagggtgtgagtatacacgacaagcacttcgagatcatattcaaacagatgctaagcatg
gcaacgatcgtcgatcctggagacagcgattacttgccggatcaacttgtgccgcttgtg
gatataaagagattcaacagggaaatcctcgaaggaaatgcgaaagtggaagagaacagg
aagtgggtcataggaaagacgctcgcgaagaggatcatcacggaaacagaagagggagaa
ctcgtggaactcgcgcaaaaaggcgatgaagtgaccgaggaacttttgaagaagatcata
gaagcgggaataaaagagatcgacgtcttcgaaaaagataaagttgtgacgtaccagatt
ctcccgaaggaacctatcaagtacaagagaagactcctgtcgctcaagaaagcggctctt
aactaccccggctggctcagcgcggctgcgttcgaagaaactgcgtgggtgttgaccgca
gcggcgatcgaaggaaaggtcgatccgctcattggattgaaggaaaacgtgatcgttggt
cagctgatacccgcaggaaccggtctcgatgtcttcgcgggaatccaggtggaagaaacc
ccaagggctgcagtggaagaagaactcgcgtga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   JCVI-CMR (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (9)   
   Pfam (8)   
   PROSITE (1)   
All databases (24)

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