KEGG   Legionella micdadei: LMI_2053
Entry
LMI_2053          CDS       T03810                                 
Symbol
ligA
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
tmc  Legionella micdadei
Pathway
tmc03030  DNA replication
tmc03410  Base excision repair
tmc03420  Nucleotide excision repair
tmc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tmc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    LMI_2053 (ligA)
   03410 Base excision repair
    LMI_2053 (ligA)
   03420 Nucleotide excision repair
    LMI_2053 (ligA)
   03430 Mismatch repair
    LMI_2053 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tmc03032]
    LMI_2053 (ligA)
   03400 DNA repair and recombination proteins [BR:tmc03400]
    LMI_2053 (ligA)
Enzymes [BR:tmc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     LMI_2053 (ligA)
DNA replication proteins [BR:tmc03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     LMI_2053 (ligA)
DNA repair and recombination proteins [BR:tmc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     LMI_2053 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     LMI_2053 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     LMI_2053 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      LMI_2053 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT RUBY_RBDX
Other DBs
NCBI-ProteinID: CEG61337
UniProt: A0A098GH75
Position
I:complement(2130916..2132931)
AA seq 671 aa
MTEDDLAKKIESLRERIRLYDYHYYVRDEPLVPDSEYDRYFKELQTLEQQNPQYISPDSP
TQRVGIAPSSAFEPVEHKQPMLSLGNVFSEDELHAFFKRVADRLDVDEESLQFVCEPKLD
GLAVNLSYENGRLAYAATRGDGAVGENITSNVKTIPAVPLKLMTNNPPAFIEIRGEVYMP
KAGFEAYNDNARTKGEKTFANPRNAAAGSVRQLNPAITASRPLAIYCYGIGACEGFEVPD
SHMGQLEFLRQLGFRVSSEIRRAQGFAGCLAYYQEMLRRRSLLPYEIDGVVYKLDNIALQ
QRLGYVARAPRFACAHKFPASEEMTELCAVDFQVGRTGALTPVARLKPVSVAGVTVSNAT
LHNMDEIIRKDIRIGDTVIVRRAGDVIPEVVSVVMEKRPAHTEAIHLPTHCPVCGADVIR
EEGEAVARCTGGLFCSAQLKRSLWHFASRRAMSIDGLGEVIIEQLVDQGIVRDISDLYKL
DLTTLANLPRMGKKSAENLLNAIEKSKKTTFARFLYALGIREVGEVSARALALEFGDVDA
LKKVSAERFMEIRDIGPIGAYHVVHFFAQKHNVEVIDKLLAQGIHWPYEKRVQLNEHHPF
YSKVMVLTGTLASMGREEAKARLLAVGAKVTGSVSVKTDYVVAGSEAGSKLDKAQELGVN
VLNEEEFLRLL
NT seq 2016 nt   +upstreamnt  +downstreamnt
atgacagaggatgatttagctaaaaaaatcgaaagcttacgagagcgtataaggctatat
gattaccactattacgttcgtgacgagccattagttcctgacagcgagtacgatcgctat
tttaaagaattacaaacacttgagcagcaaaatccccaatacatttcgcctgattcccct
actcagcgagtggggatagccccgtccagtgcatttgaacctgtcgaacataagcaacct
atgctttctctcggaaacgttttttccgaggacgagttgcatgcttttttcaagcgagtg
gctgatcgcctggatgttgatgaagagtctttgcaatttgtttgtgaaccaaaattagat
ggattagcggttaatttgagttatgaaaatggccggttagcctacgcagcaacgcgtggt
gatggtgcggtcggtgagaatatcacaagcaatgttaaaacgattcctgcagtcccttta
aaattaatgaccaataacccccccgcttttattgaaatcagaggtgaggtctatatgcct
aaagctgggtttgaggcttataatgacaatgcacggaccaagggagaaaaaacatttgct
aatccccgtaatgccgcagcaggcagtgttcgccagcttaatccagccattactgcttct
aggcctttagccatttattgctacggtattggtgcgtgcgaaggttttgaagtccctgac
agccacatgggacaattagagtttttgcggcaattggggtttcgcgtctcttccgaaatc
aggcgtgctcaaggttttgctggttgcctggcttattatcaagaaatgctaagacgacga
tcgctactaccttatgaaatagatggcgttgtttacaaattggataacattgcactacaa
cagcgtttaggctatgttgcccgtgctccacgtttcgcttgtgctcataaatttcctgct
agtgaagaaatgactgagttatgtgctgttgatttccaagtagggcggacaggcgcgtta
acacctgttgcacgtttgaaacctgtcagtgttgctggagtaaccgtgagtaatgcaacg
cttcacaatatggatgaaataatccgaaaggatattcgcattggtgatactgtgattgtg
cgccgtgcaggagatgttattcccgaagttgtttctgtggtcatggagaagcgccctgct
catactgaagcaatccatctccccactcattgtcccgtttgtggagctgatgtcataaga
gaagaaggggaggctgttgcccgttgcacaggtggtttgttttgtagtgcccaacttaaa
cgttcgctatggcattttgcgtctcggagagccatgtctattgacggcttaggtgaagtg
atcattgagcaattagtcgatcaagggatcgtccgcgatatctctgatctttataagctt
gatctaactaccttagctaatctaccgcgtatgggaaaaaaatcggctgaaaatcttctc
aacgcaatcgaaaaatcaaagaaaacaacgtttgcccgcttcctctacgctttagggatt
cgtgaagttggtgaagtcagtgctcgcgcattagcacttgagtttggtgatgttgacgca
ttaaaaaaagtttccgctgagcgattcatggaaataagagatattggcccaattggcgca
taccatgtcgttcacttttttgcacagaaacataacgttgaagtcattgacaagctttta
gcacaaggtatccactggccttatgaaaaacgtgtacaacttaacgagcatcaccctttt
tattctaaagtgatggtacttactggtactttagctagtatggggcgcgaagaagcgaaa
gcacgtctgcttgcagttggggcaaaagtcactggcagtgtttctgttaaaacggattat
gtcgtggctggaagtgaggcagggtctaaattggacaaggcgcaagaattaggtgttaac
gtattgaatgaagaagaatttcttaggcttctatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (44)   

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