KEGG   Thermosipho melanesiensis: Tmel_0875
Entry
Tmel_0875         CDS       T00550                                 
Name
(GenBank) protein of unknown function UPF0027
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
tme  Thermosipho melanesiensis
Brite
KEGG Orthology (KO) [BR:tme00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:tme03016]
    Tmel_0875
Enzymes [BR:tme01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     Tmel_0875
Transfer RNA biogenesis [BR:tme03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    Tmel_0875
 Prokaryotic type
   tRNA splicing ligases
    Tmel_0875
SSDB
Motif
Pfam: RtcB TrmB
Other DBs
NCBI-ProteinID: ABR30736
UniProt: A6LLD5
Position
complement(909930..911261)
AA seq 443 aa
MYKIKKTGNMKVDAYILTDDISSVSEAIEQLKNVASLPSIVKAAYAMPDIHWGYGFPIGG
VAAFSEIISPGGVGFDINCGVRLLKSNIIYDEISKHLEKIIEEIYKLVPVGLGSTSKKFE
KKLFKKIIENGVKEVIEMGYGKNEDLLFIEDNGTIHPASMEDISELAYKRGREELGTLGS
GNHFIEIQKVVEIYDKEIANTLGLFENQITVMIHTGSRGFGHQVATDYIKLMRNIDKNLP
DKQLVYAPFYSKLGQKYFSAMNCAANFAFANRQIITHYIRKAFSNFSRLDLIYDVAHNIA
KVEIHDNQKVVVHRKGATRAFGPNQKELPEKYKKIGQPVIIPGDMGTSSYVLVGTNKNFA
FSSTAHGAGRVLGRRQALKNLKINEVLSNLEKKGIILKSKSKKIIIEEAPEVYKNIDKVV
EIVDKLKLSKKVAKLIPLGVIKG
NT seq 1332 nt   +upstreamnt  +downstreamnt
atgtacaaaataaaaaaaacgggaaatatgaaggttgatgcatatatcctaacagatgat
atatcatctgtctcagaagcgatcgaacaattaaaaaatgtggcctcattacccagcata
gtaaaagccgcatatgccatgccagatatacactggggttatggttttcccattggtggt
gttgccgcattttcagaaataataagtcctggaggcgttgggtttgacatcaactgtgga
gtaagattactaaagagtaatataatatatgacgaaatttcaaagcatttagaaaaaatc
attgaagaaatttacaaattagttccagtgggacttggttccacatcaaaaaaattcgag
aaaaaactatttaaaaaaataatagaaaatggggtaaaagaagtaatagaaatgggatat
ggtaaaaatgaagaccttcttttcattgaagacaatggcacaatacatcctgcaagcatg
gaagatatatccgagttggcctacaagagaggaagagaagagttgggaactcttggttcg
gggaaccattttattgaaattcaaaaagttgtagaaatttacgataaagaaattgcaaat
acccttggattgtttgaaaaccaaataacggtaatgatacatactggtagtagaggtttt
gggcatcaagtagcaacagattatataaaacttatgagaaatatagacaaaaaccttcca
gacaaacaattggtttatgcaccattttacagtaaacttggacaaaaatatttttcagca
atgaactgtgccgcaaattttgcatttgcaaacagacagattatcactcattacatcaga
aaagcgttttcaaacttttcaagattagatctaatatacgacgtggcacataatatagca
aaagtagaaattcacgataaccaaaaggttgtagtccatagaaaaggtgctacaagggct
tttgggccaaatcaaaaagaacttccagaaaagtataaaaaaataggccaaccagtcatt
atcccaggtgatatgggaacttcatcttatgtacttgtaggcactaacaaaaactttgca
ttttcttcaacagctcatggagcaggaagagttctcggaagaaggcaagcattaaaaaat
ttaaaaataaacgaagtactttcaaatttagaaaaaaaaggtataatattaaaaagtaaa
tctaaaaagatcataatcgaagaagcacctgaggtatataaaaatatagacaaagtagtt
gaaatagtggataaattgaaactatcaaaaaaggttgcaaaattaattcctttgggggtt
attaagggttga

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