KEGG   Tuber melanosporum: GSTUM_00009072001
Entry
GSTUM_00009072001 CDS       T01282                                 
Name
(RefSeq) hypothetical protein
  KO
K10756  replication factor C subunit 3/5
Organism
tml  Tuber melanosporum
Pathway
tml03030  DNA replication
tml03410  Base excision repair
tml03420  Nucleotide excision repair
tml03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tml00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    GSTUM_00009072001
   03410 Base excision repair
    GSTUM_00009072001
   03420 Nucleotide excision repair
    GSTUM_00009072001
   03430 Mismatch repair
    GSTUM_00009072001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tml03032]
    GSTUM_00009072001
   03036 Chromosome and associated proteins [BR:tml03036]
    GSTUM_00009072001
   03400 DNA repair and recombination proteins [BR:tml03400]
    GSTUM_00009072001
DNA replication proteins [BR:tml03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    GSTUM_00009072001
  DNA Replication Termination Factors
   ELG1-RFC complex
    GSTUM_00009072001
Chromosome and associated proteins [BR:tml03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    GSTUM_00009072001
DNA repair and recombination proteins [BR:tml03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     GSTUM_00009072001
  Check point factors
   HRAD17(Rad24)-RFC complex
    GSTUM_00009072001
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 AAA_22 AAA_30 AAA_assoc_2 AAA_16 AAA_11 AAA_19 RuvB_N ResIII AAA_24 AAA_5 DEAD DUF815 AAA_3 AAA_28 AAA_14 DNA_pol3_delta SLFN-g3_helicase Mg_chelatase AAA_18 AAA_25 AAA_7 bpMoxR RNA_helicase AAA_2 nSTAND3 ABC_tran ATPase_2
Other DBs
NCBI-GeneID: 9186748
NCBI-ProteinID: XP_002840523
INRA: GSTUM_00009072001
UniProt: D5GJM1
AA seq 387 aa
MSDIDEMELDEEHAATNDVVFSSGQKGKKLSKANLPVSAGDTLPWVEKYRPDTLNDVSGH
EDILTTINKFVQTNRLPHLLFYGPPGTGKTSTILALARHIYGAHNIRQQVLELNASDDRG
IEVVREQIKTFASTKQIFGASTKTDGELGSFKLIILDEADAMTSTAQNALRRIMEKYTAN
TRFCIIANYTHKLNAALLSRCTRFRFSPLPIDALRRRVDHVIDAEKVKITPSAVDALLQL
SRGDMRRSLNVLQACHASSTPLDDKGRPDPTAEREDITETHIYDCIAAPHPEDVQIILKT
LLSSDITTSLRTIIDIKTKKGLALADLLSSLSDELERLEVPKQTRILWMEGLAEVEWRVG
SGGSEGIQTGALAGAVRKGVAVMKNGK
NT seq 1164 nt   +upstreamnt  +downstreamnt
atgtcagacattgatgaaatggagcttgatgaggagcatgccgccaccaacgatgttgtc
ttttcgagtggacagaaagggaagaaacttagcaaggccaacctgccagtaagtgctggt
gatacacttccttgggtggaaaaatacagaccagacactctcaatgatgtctctggacat
gaagacattctcactacgattaataagtttgtccaaacaaatcgacttccccacctgctt
ttctacggaccacctggaaccggcaaaacctctactattcttgcgctggcacggcatatt
tatggggctcataatatccgccaacaggttctcgagttgaatgcttcggatgatagaggc
atcgaggttgtccgcgaacagatcaaaacatttgcatcgacaaaacagattttcggggct
tccaccaagacagatggtgaacttggaagtttcaaattgatcatcttagatgaagccgat
gcgatgactagcactgcacagaatgcgttgaggagaattatggaaaagtacactgcaaat
acccgattctgcataattgcaaactatacacacaagctgaacgccgcgctcctgtctcgc
tgcactcgttttcgattctctcctcttccgatcgatgctcttcgcagaagggtcgaccac
gtcatcgacgcagaaaaagtgaaaatcacaccttctgccgtagatgctcttcttcaactc
tctcgcggagatatgagacgctcgttgaatgttttgcaggcgtgtcatgcttcatctacc
ccattagatgacaaaggccgcccagaccctactgcagagcgggaagatatcaccgaaacc
catatctacgactgtatagctgcaccacaccctgaagacgtacaaatcatcctcaagact
ctgctaagcagcgatatcacaactagcctgagaaccattatcgatatcaagaccaaaaaa
ggtttggcattagccgacttactatctagtttgtcggatgagttggaaagactggaggtc
ccaaaacaaacgaggattctctggatggagggtttggctgaggttgaatggagagttgga
agtggtgggagcgaagggatacagaccggtgcattggctggggcagttagaaaaggggta
gcagtcatgaaaaacggcaaatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   RefGene (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   INRA (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (31)   
   Pfam (31)   
All databases (49)   

Download RDF
DBGET integrated database retrieval system