KEGG   Phaeoacremonium minimum: UCRPA7_7381
Entry
UCRPA7_7381       CDS       T03102                                 
Name
(RefSeq) putative dna ligase 4 protein
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
tmn  Phaeoacremonium minimum
Pathway
tmn03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:tmn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    UCRPA7_7381
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tmn03400]
    UCRPA7_7381
Enzymes [BR:tmn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     UCRPA7_7381
DNA repair and recombination proteins [BR:tmn03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     UCRPA7_7381
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT_2 DNA_ligase_A_C RNA_ligase BRCT DNA_ligase_IV LIG3_BRCT NIBRIN_BRCT_II
Other DBs
NCBI-GeneID: 19328135
NCBI-ProteinID: XP_007918104
UniProt: R8BCR9
Position
Unknown
AA seq 995 aa
MSQNKRPASPTDSAKDEDERQYGAGPLTLEELEEKYPNRPRNHSKTLLFSELYRSLFNPL
NENKAQPSGPRVARKKVGPHGPSKLSPHEQRRAIIQRFISRWRAEVGSDFYPALRLILPD
KDRDRGVYGLKENTIGKLLVKLMKIDKNSEDGYNLLHWKLPGQTTASRMAGDFAGRCFEV
LSKRQMRTEPGNMRIAEVNELLDKLAGASGEAEQLPIFDIFYKRMNAEELMWLIRIVLKQ
MKVGATERTFLDLWHHDGEALFSVSSSLRRVCWELHDPEFRLEEDESGINLMQCFQPQLA
QFQMPESFQKMVTHLGATEENPEFWIEEKLDGERMQMHMMEDEETPGGVKFCFWSRKAKD
YTYLYGNGFEDDNSALTRHLKEAFSDRTKNCILDGEMITWDPKTDKIVPFGTLKTAALSG
QKNPFDDSSERPVYRVFDILYLNDKPLTKYTLRDRHRALETAVPGVPGRLEIHPHIAATS
PDAIEPQLRKIVAEASEGLVLKNPKSMYRLNSRNNDWIKVKPEYMSEFGESLDCVVIGGY
FGSGRRGGNLSSFLCGLRASENYIKAGVNPEKCWSFFKVGGGFKAEDYAEIRHRTEGKWI
DWDANNPPSEYVELGGGEKLQYERPDVWIRPKDSIVISVKAASIGQSDSFAIGETLRFPR
FRRLRLDRSWDSALDIDQLHALKSRVDQEAQEKKNMEIEDRRSRRSTKRVKRETVIAGQT
RSGGADGNGQPRTQVFEGMTFLVLSEALKPIRKTRDELVALVKENGGQAVLEEKQNVDSL
IVVADKKVVKAAAIIKRGERDVIKPKWIIDSINQGYPLPFEKGHLFWATDAMAKIAENNT
DQYGDSYARDAEVEELREILANMPKLDLGEGNFDKETFLTELEEHGHELPNLKGWTFRRC
RIFFAVSEDVWDVTVMMLRNYVQFGSATVAETLDDESITHVVVVARDETAKRELAADVRY
QISSRKSVPRVVTDKWVMDCWEASTLVDEEQYAPL
NT seq 2988 nt   +upstreamnt  +downstreamnt
atgagtcagaacaagcgaccagcatcgcctaccgattccgcgaaggatgaggatgagcga
caatatggcgcaggacccttgacactggaggagctggaggaaaaatacccgaaccgtccc
cgcaaccactctaagacactactcttctccgagctctatcgctcgctcttcaaccccctc
aacgagaataaggcacagccctctggcccgcgggtcgcacgcaagaaagtcggccctcat
ggaccatccaagctcagcccacacgagcaacgccgcgccatcatccagcgcttcatctca
cgatggcgtgccgaggttggcagcgacttctacccagccctacgactaatcttgcctgac
aaggaccgcgaccgtggcgtctatggcctgaaggagaatactattggtaagcttctcgtc
aagctcatgaagatcgacaagaactccgaggacggctacaatctcctccactggaagctg
ccgggacagaccacagcgagccgcatggcgggcgactttgccggccgctgcttcgaggtg
ctgagcaagcgtcagatgcgtacggagcccggtaacatgcgcatcgccgaggtcaacgag
ctgctggacaagcttgcgggcgcgagtggcgaggccgagcaactgcccatcttcgatatc
ttctacaagcgcatgaatgccgaggagcttatgtggctcatccgcattgtgctcaagcag
atgaaggtcggtgccactgagcgtaccttccttgacctttggcatcatgatggtgaggcg
ctgttcagcgtcagcagcagcttgcgccgtgtttgctgggaactgcacgacccggaattt
cgtctggaggaagacgagtctgggatcaaccttatgcagtgctttcagccacagctggcg
cagttccagatgcccgagagcttccagaagatggtcactcacctgggtgcgacggaggag
aaccccgaattctggatcgaggagaagcttgacggcgagcgaatgcagatgcacatgatg
gaggatgaggagacgcctggaggcgtcaaattctgcttctggtcacgaaaggcgaaggat
tacacatatctctacggcaatggctttgaggatgacaactcggcgctcacacgacacctt
aaggaggcgttttctgaccggactaagaactgtattctcgacggagagatgatcacctgg
gacccgaagaccgacaaaatcgtcccgtttggtacactcaagactgcggccctgtcaggg
cagaagaaccccttcgatgactcaagcgaacgtcctgtgtaccgcgtcttcgacatcctg
tacctcaacgacaagcccctcaccaaatacacactgcgagatcgacatcgtgctcttgag
acggccgtcccaggtgttcctggtcggctagagatccaccctcatatcgcggcaacttcc
ccggacgcgatcgaaccccagcttcgcaagattgtcgcggaagcgtcagagggcctcgta
ttgaagaaccccaagtccatgtaccggctcaacagtcgcaacaatgactggatcaaggtc
aagccagagtacatgtccgagtttggcgaatcgcttgactgtgttgttatcggcggttat
ttcggctctggccgtcgtggtggcaatctgtctagttttctttgtgggctgagagctagt
gagaactacatcaaagctggcgtgaaccctgagaagtgctggagcttctttaaggtcggc
ggtgggttcaaggcggaggactatgctgagattcggcaccgcaccgaaggaaagtggatc
gactgggatgcgaacaatcctccctccgagtacgtcgagcttggcggcggcgagaagctg
cagtatgagcggccagacgtctggatcaggccgaaggacagcatcgtcatctccgtgaaa
gccgccagcattggacagtctgattcgttcgctattggcgagacgctgcgctttcctcgc
ttccgacgactgcgactcgatcgctcctgggactcggccttggatattgatcagctgcac
gcgcttaaaagccgcgtggatcaagaggcgcaggagaagaagaacatggagattgaagat
aggcgcagtcggcgttcgaccaagagagtcaagcgggagactgtcatcgctgggcagacc
cgctctggaggtgctgatggcaacggccagcccaggacacaggtgtttgagggcatgacg
ttcttggtgctgagtgaggctctcaagcccatccgcaagacgagagatgagcttgtggct
ctggtcaaggaaaatggcggacaggctgtcctggaagagaagcagaacgtggactcactg
atcgtcgttgccgataagaaggtcgtcaaggcggccgctatcatcaagagaggggagaga
gacgtcatcaagcctaaatggatcatcgacagcatcaaccaaggctacccgttgcctttc
gagaaaggtcatctattctgggccacagatgcgatggcaaagattgcggagaacaacacc
gaccagtatggcgacagttatgcacgagatgctgaagtagaggagctccgagagattctc
gcgaacatgccaaagctggatttgggcgaaggcaatttcgacaaggagactttcctcacg
gagcttgaggaacacggccacgagttgccgaacttgaaaggctggaccttccgcagatgc
cggatcttcttcgccgtcagcgaggacgtctgggacgtcacggtgatgatgctccggaat
tatgtccagttcggcagtgccactgtcgcggagacgctggacgacgagtccatcacgcat
gttgtcgttgttgctcgtgacgagactgccaagcgggaacttgctgctgacgtgcggtat
cagatcagctcgaggaagtcggtgcctcgcgtcgtcacggacaagtgggtgatggattgc
tgggaggcgagcacccttgtggatgaggagcagtatgctccgctgtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (46)   

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