KEGG T03900: THMB

Thermotoga maritima Tma100: THMB_1480

Entry

THMB_1480         CDS       T03900

Name

(GenBank) transcription-repair coupling factor

K03723

transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]

Organism

tmq Thermotoga maritima Tma100

Pathway

tmq03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:tmq00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    THMB_1480
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tmq03400]
    THMB_1480
Enzymes [BR:tmq01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     THMB_1480
DNA repair and recombination proteins [BR:tmq03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      THMB_1480

SSDB

Motif

Pfam:

DEAD Helicase_C TRCF UvrB_inter CarD_TRCF_RID ResIII SNF2-rel_dom AAA_22 AAA_30 SecA_DEAD DctP AAA_16 IstB_IS21 ERCC3_RAD25_C AAA_25 AAA_5 RecG_dom3_C P4Ha_N SLFN-g3_helicase

Other DBs

NCBI-ProteinID:

AKE31081

Position

1465268..1467949

AA seq 893 aa
MVEILLLPNERFSNIEGYIFYPSRDVLPLEDVVLSPEIKGKRIEILWRLLNGENLKIATT
LKALTEKVFSPDFLRENSLMIARSTKLTLSPEKLVEMGYELVFTVQNVGEFAIRGDIIDI
YSPGNDFPVRIELFGDEIEEIRFFKVDTQRSFQGVDKTLILPFVDFYGESTLLDFLKTDA
RFICEDLQKVLDEYRKFRKEMRDLLKERYNDFFDERVVEVILKNVEKGSAPLSTRVEKKE
SLPILDVDEIEEGGLVVHREHGIAIFEGIVRLKGVLGERDYLKLKYEDAILYVPIEKIDR
VHKYIGDPSQVKLDRMNRGKWKQTLKKVREDIEKKIKELVELYMKRQEAQGLSLPGDPEL
EEKFAESFPYIETPDQQQSIEEVLSDLASEKPMDRLLCGDAGVGKTEVALRAAFRAVASG
KQVAVLVPTTVLARQHYENFKERMEPFGVKVELLDSSRTAREKKEIIEKLKKGEIDIIIG
THSLLNERIEFSDLGLVIIDEEQKFGVEQKERFKKLRLSVNVLTLSATPIPRTLHMALSG
MKDFSVINSPPPGRKPVYVYVAEYSDDLVKGAVIREINRGGQVIYVHNRVEELPEVFEKL
KRMFPELEIAVAHGKMSRKTMERIVHEFYRGNIDVLLCTTIIENGVDIPNANTLIVDDAQ
RYGLSQLYQLRGRVGRSDRRAFAYFLYPKGTPRSALERLKVLKSYTGFGSGLQIALKDME
LRGVGDVLGLEQHGNVVSVGLKLYNEILKETITRFKERRIEKKHSVNVEIENPPGRFFIP
EDYVQNPVERLRLYRRLASSLDEEDLEEILEEMKDRFGEPPEEVKLLVDYFRLRVRASKL
GIKKIRFDHSMVEIFPSRNSPFLNHPRYDRRSGSVVLYTRKDPVEFLMDMLKK

NT seq 2682 nt +upstreamnt +downstreamnt
atggttgagattcttctgctgccgaacgaaaggttttcgaatatagaaggatacattttc
tatccttcgagagatgttttgcctctcgaagatgttgttttgtcacccgagataaaagga
aaaagaatagaaatcctgtggaggcttctaaacggggagaacctcaagatagccactacc
ctgaaagcgctcaccgaaaaggtgttctcacccgattttctgagagaaaactccctgatg
atagcacgatccacaaaactcacgctgtccccagaaaaactcgtcgaaatgggatatgaa
cttgttttcactgttcagaacgtgggagaatttgccattcgcggagatataatcgacatt
tactctccagggaacgactttcccgtgaggatagaactgtttggagacgaaattgaagaa
attcgtttcttcaaggtagacacccagcgttcattccaaggtgttgataagactctgata
cttccttttgttgatttctacggtgaaagcaccttgcttgatttcttaaagacagatgct
cgcttcatctgtgaagatcttcaaaaggttctggatgagtacagaaagttcagaaaagaa
atgagggaccttttgaaggaacgctacaacgacttcttcgatgaaagagtagtcgaagtg
atactcaaaaacgttgagaagggttctgcaccgctatcaacacgtgttgagaaaaaagaa
tcgctgcccattctggatgtcgatgagatcgaagagggtgggctcgtagttcacagagag
cacggaatagccattttcgaggggattgttcgtctcaagggagttctcggagagagggat
tatttgaagttgaaatatgaagacgcaattttgtacgttcccatcgagaagatcgacaga
gttcataaatatataggtgatccttcgcaggttaaactcgaccggatgaaccgcggaaaa
tggaaacaaacactgaagaaagtgagagaagacatcgagaaaaagatcaaagaactcgtt
gaactttacatgaaaagacaggaggcccagggtctttctcttccaggtgacccagaactg
gaagaaaaattcgcggaatcttttccatacattgaaactcctgatcagcagcagagtata
gaagaagtactaagcgatcttgcctctgaaaaaccaatggacaggctcctgtgtggagac
gcgggtgttggaaaaacagaagtagctctgcgagctgcgtttcgtgcagtcgcatctggt
aagcaggtagcggtgctcgtcccaaccaccgttctggcaagacaacactacgagaacttc
aaagagagaatggaaccgttcggtgtaaaagtggaactcctggacagttcaagaacagcg
agagaaaagaaggagatcatcgaaaagctgaagaagggagaaatagacatcatcataggt
acacactctctgctgaacgaacggatcgaattctccgatcttggtcttgtcatcatcgac
gaagaacaaaagtttggagttgagcaaaaagaaagattcaagaaactgagactctcggtg
aacgtgctaaccctgagtgctacacctattccacgcaccctccacatggccctctctgga
atgaaagatttttctgtgataaattctcctccccctggaagaaaaccagtatacgtttat
gtcgcagagtacagcgatgatctcgtcaagggagcggtgatcagggagataaacagggga
ggtcaggtgatctacgttcacaaccgcgtggaagaactaccggaggttttcgaaaaactg
aaaaggatgtttccggagttggaaatagcggttgcccacggaaagatgtccagaaaaacc
atggagagaattgtccacgagttctaccgcgggaacatcgatgttcttctgtgtaccaca
attatcgagaatggtgttgatataccgaatgcaaacacactcatagtggatgacgcacag
agatacggcctttcacagctctatcagctcagaggaagggtgggtagaagcgaccgaagg
gcctttgcgtacttcctgtacccgaagggtactccaagaagcgctcttgaaagactgaag
gtgcttaaatcctacacaggctttggaagcggtcttcaaatagcactgaaagatatggaa
ctgagaggtgtgggagatgtcctcggtttggaacaacatggaaacgttgtgtccgtcggt
ttgaaactgtacaacgaaatcttgaaagagaccatcacgagattcaaagaaagacgaatc
gaaaagaaacactctgtgaacgttgaaatagaaaatcctccgggcagatttttcataccg
gaagattacgtgcaaaatcctgtggagaggttgagactttacagaagactcgcctcctct
cttgatgaggaagatctcgaggaaatactggaggagatgaaggatagattcggagaacca
cccgaagaagtgaaattactcgttgattacttcagattgagagtcagggcctcgaagctg
ggaataaagaagatcaggttcgatcactcgatggtggaaatctttccaagcaggaactcg
ccgtttttgaatcacccgagatacgatcgacggtcagggagtgttgttctctacaccagg
aaggatccggtggagtttctcatggatatgttgaaaaaatga

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (19)   
   Pfam (19)   
All databases (28)   

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