KEGG   Tremella mesenterica: TREMEDRAFT_40446
Entry
TREMEDRAFT_40446  CDS       T03139                                 
Name
(RefSeq) hypothetical protein
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
tms  Tremella mesenterica
Pathway
tms03020  RNA polymerase
tms03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tms00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    TREMEDRAFT_40446
  09124 Replication and repair
   03420 Nucleotide excision repair
    TREMEDRAFT_40446
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tms03021]
    TREMEDRAFT_40446
   03400 DNA repair and recombination proteins [BR:tms03400]
    TREMEDRAFT_40446
Enzymes [BR:tms01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     TREMEDRAFT_40446
Transcription machinery [BR:tms03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     TREMEDRAFT_40446
DNA repair and recombination proteins [BR:tms03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      TREMEDRAFT_40446
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_3 RNA_pol_Rpb1_7 RNA_pol_Rpb1_4 RNA_pol_Rpb1_R ADD_DNMT3
Other DBs
NCBI-GeneID: 18493152
NCBI-ProteinID: XP_007006723
JGI: Treme1_40446
Position
Unknown
AA seq 1808 aa
MTITFPYSSAPTRQVKEIQFGVMSPEEIKAFSVAKIEHPEVMDENNRQKVGGLMDPRMGT
IDRNFKCQTCLEGMAECPGHFGHIELARPVFHGGFMVKVKKILECICFSCGKLRVDVRDP
MVANIVRRVKPQHRLKAIWAIASKRTSCETDERDDENGDATNEAEFQAEKELGVPKGHGG
CGADQPLWRKEALKLMAKSKPSTTDKDESGSELEIRSVSPGEIYNVLRKIPAEDLHVMGL
NIDYARPEWMILTVMPVPPAAVRPSISIDGGAMRSEDDLTYKLAQILKTSATVRRLEAEG
VPPSVVDEQFDLLQFHVATYMDNEIAGLPQDMQKSGRPIKAIRARLKGKEGRMRGNLMGK
RVDFSARTVITGDPNLQLDQVGVPKSIAMTLTYPERVTPYNIVYLQTLVNNGPSTYPGAR
YYVKDTGERIDLKYRKSGEPISLQFGWIVERHLKDGDFVLFNRQPSLHKMSMMCHRVKLM
NYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIISPQANKPVMGI
VQDTLCGIRKFTLRDNYCDWKQVQNILLWLPGWDGTIPTPAILKPKPMWTGKQLMSMTIP
KGINITFKNNEKPSPIDITDENVLIDNGEIIHGTIVKNMAGSANNGLVHVIFRELGHVAA
RDFFSACQMMVNFWLLHYGFSVGIGDTIVDTATMAGITNRMVEAKEAVQRLIAEAEANRM
KPKPGMTIRETLEAGIATELNKARDWTGKTAQDNLKEDNNVKQMVVSGAKGSFINISQMT
GVVGQQFVEGKRINFGFKHRTLPHFPKDDYGPESRGFVENSYLRGLTPQEFWFHAMGGRE
GLIDTAVKTAETGYIQRRLVKAMEDLKVAYDGTVRNSTGDVVQFLYGEDGMDGAAMEKQS
FDIIRLSDRAFERRYKIDVFGGPGAGFGEKTLAPGIDKSSASLQNLLDDEYRQLREDRQL
LRQYIFPDGNPSHPLPANIQRIIQNSQQLFNVTVHTVSDLDPVHLIEMRKGLCDRLVIVR
GDDKFSKIHQHNATLLFNILVRSHLATRRILEEHHLTREAFEWVIGEIEQIFNKAVCDPA
EMVGTLAAQSIGEPATQMTLNTFHYAGVASKSVTGGVPRLKEIINVAVNIRTPALNVYLD
REYSQTEKAAHQIMRKLTYTRLRDITASVEIFYDPKLDSTDIEEDKDFVDAFFAIPDEDI
KLEQHSPWLLRLELDRAKVLEGGYEMSQVVNAIVDTVGKDVFVIHSEDNAEKLIIRIRVV
SDEKEDDQLIGEEDIFLKKIEGTLLDHVELGGITGIQRVFISEGKQTVLSQQGEYDQERE
WFLETDGINLKEVLAVDGVDAVRTYSNNCYEVYQTLGIEAGRNALFKELNGVIEMGGSYV
NYRHLALLCDLMCSKGQLMSITRHGINRTDAGALSRASFEETVEILLEAAAVGDVDDCHG
VAENVLLGQIAPMGTGAFDVSLDLEMLKDVIVDHRLPVQNMMAAGVLSGGMTPGGAMTPY
DALSPMWNGQGSVGAAAFSPMQTSNNEESGGFNYMGYGMSPMQGGLSPGGGGGYSPSSPT
GYSPTSPFAITSPTYSPSSPYQGNAGSASPWIPRSSTNGGLNITSPAYSPSSPQYSPTSP
MYSPASPKFSPSSPTFSPSSPNYSPASPAYGGGGGGGLARNSPFSPASPAYSPTSPMGIT
SPRYSPTSPKYSPASPAFSPTSPVYSPTSPAPFQATSPRYSPNSPTFSPTSPVYSPTSPV
YSPASPAFSPTSPAYSPASPAYSPNSPAYSPTSPAAQGSNGQPQTNGQPARKGWGTSGGY
GTSPSWKG
NT seq 5427 nt   +upstreamnt  +downstreamnt
atgacaatcacttttccgtattcctccgctcccacgcggcaggtcaaggagatccaattt
ggggtgatgagtccggaggagattaaagcattctccgtagccaaaatagagcatcccgaa
gtcatggacgagaataatcggcaaaaagttggaggactgatggacccgagaatgggcacc
atcgaccggaactttaaatgccagacttgtctcgagggcatggccgaatgtccaggtcat
ttcggtcacattgagcttgcacgacccgtgtttcatggcgggtttatggtcaaggtcaag
aagatcttagagtgtatctgtttcagttgtggcaaactgcgtgttgatgtgcgcgatcct
atggtcgctaacattgttcgtcgcgtgaaaccacaacatcggctaaaagctatttgggcc
atcgcctcgaagagaacgtcgtgtgagacggacgaacgggacgatgagaatggtgacgcc
accaacgaggcagagtttcaagcggagaaggagcttggcgttccgaaaggtcatggcggc
tgcggtgcagatcagcccctgtggagaaaagaagctctgaaactcatggccaagtccaaa
ccatccacgaccgacaaggacgaatctggcagcgagctcgagatccgctccgtctctcct
ggggagatatacaacgtccttcgaaagatccctgccgaagatcttcacgtcatgggtctg
aacatcgactacgcccggccagagtggatgatcctcaccgtcatgcctgtaccacccgcc
gctgtccgaccctctatctcaatagatggaggtgctatgcggagtgaagacgatttgact
tacaagcttgctcagatcctcaagacaagtgcgaccgttcgtcgactcgaagctgaaggt
gtaccacccagtgttgtcgacgaacaatttgatctgctgcagtttcacgtggcgacgtat
atggataatgagattgccggtctgccgcaggacatgcaaaagtctggaagacctatcaaa
gctatccgtgcgcgtttgaagggtaaagaagggaggatgcggggtaatttgatgggaaag
cgagttgacttttcggcccggacagtcatcaccggtgatccaaaccttcagctggatcag
gtcggagtgccgaaaagtatcgccatgacgttaacatatccggagagggtgacgccatac
aacatcgtctacttgcagacactcgtcaacaatggtccctcgacatacccaggcgcacgg
tactatgtcaaagataccggggagcggatagacttgaagtaccgcaagtccggtgaacca
atcagtcttcaattcggttggatcgtagagagacatctcaaggatggagattttgtacta
ttcaatcgacaaccgtctctgcacaagatgtctatgatgtgtcaccgtgtcaaattgatg
aactattccaccttccgtctgaacctctctgtaacgtcgccatacaacgccgatttcgat
ggtgacgagatgaacttgcatgtccctcaaagtgaggagacacgagcggagttgagtcag
attgcatgggtgcccagacagattatctccccgcaggccaacaaacccgtcatgggcatc
gtgcaagatacgttatgcggtatccgcaagttcactctccgcgacaattactgcgactgg
aaacaggttcagaatatccttctctggctgccgggctgggatggtacgatcccgacaccg
gctatcctcaaaccaaagcccatgtggaccggaaagcaactcatgtccatgacgattccc
aagggaatcaatatcacgttcaagaacaacgaaaagccctctcccatcgacatcaccgac
gagaatgtcctcatcgacaatggcgagatcatccacggcacgattgtcaagaacatggca
ggtagtgcgaacaacggattggtgcacgtcatatttcgagagttgggacatgtcgctgcg
agggacttcttttcagcttgtcagatgatggtcaatttctggttgttgcactacgggttc
agtgttgggatcggagatactatcgtggacacggctacgatggcaggaatcacaaatcga
atggtagaagcgaaagaggcggtccaacgactcatcgcagaggcagaggcgaatcgaatg
aagccaaaaccgggtatgaccatccgcgagacgctcgaagctggtattgcgaccgagttg
aacaaggctcgtgattggacgggtaaaacagcacaagacaacttgaaggaagacaacaac
gtcaaacagatggtggtatctggcgccaagggttcattcatcaacatctcccagatgacc
ggtgttgtcggacaacaattcgttgaaggaaagcgtatcaatttcgggttcaaacatcgt
actcttcctcatttccccaaagatgactacggtccggagtctagaggtttcgtcgagaac
tcttatcttcgcggtcttacgcctcaggagttttggttccacgcgatgggtggaagagaa
ggtttgatcgatactgccgtcaaaactgccgagaccggatacatacaacgacgactggtc
aaggcgatggaggatttgaaggtcgcatatgacgggacggtgcggaactcaactggggat
gtcgtccaattcctttatggtgaggatggtatggacggggcggctatggagaagcaaagt
ttcgacatcattcgtctatcagatcgagctttcgaacgtcgatacaaaattgacgtcttt
ggtggaccgggtgctgggttcggagagaagacgttggccccggggatcgacaaatcttct
gcgtctctacaaaacttgttggacgacgaatatcgtcaattgagggaagaccgtcaacta
cttcgacagtacatcttcccggacggtaatccaagtcacccgcttcccgccaacattcag
cggatcatccaaaactctcagcagctgttcaacgttactgtacatacggtcagtgacctc
gatcctgtacatctgatcgagatgcggaaaggcctttgcgaccgtttggtcattgtgcga
ggcgatgacaagtttagcaagatccatcagcataatgcaaccctcctgttcaacatcctc
gttcgatctcaccttgccacccgcagaatattggaggaacatcatcttactcgggaagcg
ttcgagtgggtgatcggggagatcgagcagatcttcaacaaagccgtctgtgaccctgct
gaaatggtggggacgcttgctgctcagtccatcggtgaacctgcgactcaaatgacgttg
aacaccttccactacgccggtgtcgcttcaaagtcagtcacaggtggcgtgcctcgattg
aaagagatcatcaatgtcgccgttaacatccgtacgccggcgttgaacgtgtatctggat
cgtgaatactcgcaaacggagaaggccgctcatcagatcatgcgaaaactcacatatact
cgattgagagatatcaccgccagtgtcgaaatcttttacgatcccaaattggacagcacg
gacattgaggaggataaagactttgtggatgctttctttgccatcccggacgaagacatc
aaattggaacaacattctccttggttgctccgtctagaactggaccgagcgaaggtgttg
gaaggagggtacgaaatgtctcaagtcgtcaatgccattgtcgacactgtaggtaaagat
gtattcgtcattcactcggaagacaatgcggagaaactcatcattcgtattcgagtggtt
tcggatgagaaagaagatgaccaattgatcggtgaagaagatattttcttgaagaagatt
gagggtactttgttagatcatgtcgaattgggtggtatcactggtattcaaagagtgttt
atatctgaaggcaagcaaactgttctttcacaacagggagagtatgatcaagaacgagaa
tggttccttgaaaccgacggtatcaatctgaaagaggtattggcggtggacggtgtcgat
gctgtgcgaacatattcgaacaattgttacgaagtttatcaaacgttgggtatcgaagct
ggtcgaaacgcattattcaaagaattaaacggtgtcatcgaaatgggaggttcatatgtc
aattatcgacatttagctcttctctgcgatctcatgtgttcaaagggtcaactcatgtca
ataactcgacacgggatcaatcgaacggatgctggtgctctttcccgagcttcattcgaa
gagactgttgagatcttactcgaagctgcagctgttggtgatgtggatgattgtcatggt
gttgccgaaaacgttttattaggtcaaattgcacctatgggtactggagctttcgacgtt
tctttggatttggaaatgctcaaagatgtaattgtggatcatcgtctacctgttcaaaat
atgatggctgcaggagttttaagtggaggaatgacacctggtggagccatgacaccatac
gacgcgttatcacccatgtggaatggtcaaggttctgttggagcagccgctttctcacca
atgcaaactagcaataacgaagaaagtggtggattcaattatatgggttatggaatgagt
ccaatgcaaggtggattatcacctggtggtggtggtggttattcaccttcttcaccaaca
ggatattcaccaacttcaccattcgcaattacatcaccaacatattcaccttcttcacca
tatcaaggaaatgcaggttcagcttcaccttggataccaagatcttcaactaatggtggt
ttgaatattacatcacctgcatattcaccttcttcaccacaatattcacctacatcacca
atgtattcacctgcatcaccaaaattttcaccttcttcacctactttttcaccttcttca
ccgaattattctccagcttcacctgcttatggtggtggtggtggtggtggtttagcgagg
aattcacctttttcacctgcttcacctgcttattcaccaacttcaccaatgggtatcaca
tctcctagatattcaccaacttcaccgaaatatagtcctgcaagtccggctttttcacct
accagtccggtatatagtccgactagtccagcacctttccaagctaccagtcctagatat
tcacctaacagtccgactttttctcccacatcaccagtttattcccctacttcacccgtt
tattcacctgccagtccagctttctctcccacctccccagcgtacagtccggcatcacca
gcttacagtcctaattccccagcttactcccccacttcacccgccgcccagggttccaac
ggtcagccacagacgaatggacaaccagcgaggaaaggttggggtacgtcaggaggttat
ggtacttcacccagttggaaaggttag

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