KEGG   Tremella mesenterica: TREMEDRAFT_42066
Entry
TREMEDRAFT_42066  CDS       T03139                                 
Name
(RefSeq) hypothetical protein
  KO
K14555  U3 small nucleolar RNA-associated protein 13
Organism
tms  Tremella mesenterica
Pathway
tms03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:tms00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    TREMEDRAFT_42066
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:tms03009]
    TREMEDRAFT_42066
Ribosome biogenesis [BR:tms03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    TREMEDRAFT_42066
SSDB
Motif
Pfam: WD40 Utp13 NBCH_WD40 ANAPC4_WD40 Ge1_WD40 WD40_like VID27 Cytochrom_D1 Mcl1_mid RNase_P_p30
Other DBs
NCBI-GeneID: 18493318
NCBI-ProteinID: XP_007000989
JGI: Treme1_42066
Position
Unknown
AA seq 936 aa
MNAHAPRKALKTRSASKSSCIYSADNYSYRASPRSLRPVYTGGPVLISKDGQWLITTLEE
QVLISEVQTGLQVARVRGDTTPITSLSLSYHTSPPTLITCHQSTSIRQYPLPSTASSSLQ
VPYLTYSRQIPKAHSAPILVSAVSPDSTLFATGSSDGTVKVWDSAGGYVTHLFRGHGGPV
SALRFSQPPSGGGKMLLFTGSTDSRIRIYDLHDQKMAGPSKPKHVLEGHVSVVRGIDLSE
DGRWLVSAGRDKVVLLWDMNGEVKQGKEKGKKGEPRLVQTVIVQEQVEAVGWLRGTILGK
NGMMCFTGGEKGVVRIWDVAKGVEVGSMVGVEGVDTAEVDEDEQRGIIDVLYDQSSSSLI
SIHADQNIIFNSLTDGSPTRRVVGFNDEIIDAVFLSSPTSSSHSHLALATNSNLIRMYST
STFDARLLSGHKDIVLCLGTSIDHRLLVSGSKDSTARLWYFTPSSPNSSPSSQSEWRCIA
SCEGHAESIGAVALSRKLDETTGFPKFLITASQDRTAKLWDLSSLSSTGDDDKPKSLATL
RIHEKDINSLDISPNDRFLASGSQDKLVKIFEIDYTSSAGGTKGALKLVGTCKGHRRGVW
TVKFSKVDRIVASGAADRSVKLWSLDDFTCLKTFEGHTNSVLRIDFLSQGMQLITSSSDG
LVKLWNIRDEECVKTLDNHEDKVWALAISQDERTIVSAGADSVATFWEDATEMEQEEANA
ALVKSVQIEQDYTNYLSIKDYRRAILLALAMSQPGRLYNLFSSVISSSSSSSLSTTSTST
SLNPSISLDPSNSSNSNKPTESLTGSKEIDMVIQTLSLPDLSQLLLYVSDWNTHSRTSTV
SQIILYAILQLRTPEEIIQSFNRNTRNGMLSDGGKKDMKKEINMRDLLDGLIPYSERHFS
RLDRLVQDTYVLDYILGEMDGVVGQDMVNEIGDVVM
NT seq 2811 nt   +upstreamnt  +downstreamnt
atgaacgctcacgcacctcgcaaggcactcaagactaggtcagcttcaaaatcctcttgt
atctactcagctgataattatagctatcgtgcctcaccccggtcccttcgacccgtctac
accggtggtccagtcctcataagcaaagacggtcaatggctcattacaactctggaagag
caagttctcatctctgaagttcagactgggcttcaagtcgcaagagtcagaggtgacaca
acccccataacttccctttcactctcctaccacacctccccacctacattgataacatgt
catcaatcaaccagcatcagacagtatcctcttccatccacagcctcttcttccctccaa
gtcccttacctgacctactcccgccaaatcccaaaagctcattccgcacctatactcgtt
tctgccgtatcaccagattctaccttgttcgccactgggtcatctgatgggactgtcaaa
gtatgggattctgccggtgggtatgtgacacatttgttccgaggacatggaggtccggtt
tcggctctacgtttcagtcaacctccatcaggaggaggcaagatgttactcttcactgga
tccaccgattccagaatacggatatacgatctgcacgatcagaaaatggcaggaccgagt
aaacccaaacatgtgctagaaggacatgtgagtgttgtgagaggtatagacctgagcgag
gatggaagatggttagtaagtgccggaagggacaaggtggtcttgttgtgggacatgaac
ggggaggtcaaacaggggaaagagaaagggaaaaagggagaaccgagattggtacagact
gtcattgttcaagaacaagtggaagctgttggctggctccgaggtacgatactgggtaag
aatgggatgatgtgttttactggaggtgaaaaaggtgttgtgagaatatgggacgttgct
aaaggtgtggaagtgggcagtatggtaggtgtggaaggtgtcgatacggctgaagtggat
gaagatgaacagagaggtatcatcgatgttctgtatgaccaatcctcatcatctttgatt
tccattcacgccgatcaaaatatcattttcaattctctgaccgatggttctcccacaaga
cgagtagttggatttaacgacgaaatcatcgatgctgtctttctctcatctcccacttct
tcatctcattctcatctcgcattagccacgaactccaatctcatccgaatgtattccaca
tcgacatttgacgctcgtcttttatccggacacaaagacattgtattgtgtttaggaacc
agtatcgaccaccgtcttctcgtcagtggtagtaaagattccactgcccgactttggtat
ttcaccccttcctctcctaattcttcaccctcctctcaatcagagtggagatgtatagcc
tcttgcgaaggtcacgcagaatccataggagctgtcgccctttctcgaaagttggacgaa
acaactggattcccgaagtttctcattacagcctcacaagaccggactgctaaactgtgg
gatctctcctctctttcttccactggagatgatgacaaacctaaaagtctggccacgttg
aggatccacgaaaaagatatcaattctcttgatatctcgccaaatgatagattcctcgct
tcaggttctcaagataaactcgtcaaaatattcgagattgattatacttcctcggctgga
gggacgaagggagccttgaaattggttggaacgtgtaaaggtcataggagaggggtatgg
acggtgaagtttagtaaagtggataggatagtagcgagtggagcggcggatagatctgtc
aagttgtggagtttggacgattttacttgtcttaaaacattcgaaggtcatacaaactct
gtcctacgcatagacttcctctcccagggtatgcaactcatcacatcttcctcggacggg
ttggtgaaattgtggaatatccgagatgaggagtgcgtgaagactttggacaatcatgag
gataaggtctgggcactggccatatcgcaagatgagaggactatcgtttccgccggcgct
gattccgtcgctacgttctgggaggatgcaacggagatggaacaagaagaagccaatgcg
gctttagtcaaatctgtgcaaatagaacaagattacacaaattacctttccatcaaagat
tatcgtcgtgctattttactcgctttagcaatgtcacaaccaggaagattatataatctt
ttttcttccgtcatttcttcttcttcctcatcatccctctcaaccacctccacctccacc
tcactcaacccatccatctctttggacccctccaactcatccaattcaaataaaccgact
gaatctttgacaggctcaaaagaaatagacatggtaatccaaactctctctttacccgat
ttgtcccaattattactctatgtaagtgattggaacactcattctcgtacatcgacagta
tcacaaataatcttgtacgccatattacaacttcgtactcctgaggagatcattcaatct
tttaatcgaaacacgagaaatggtatgttgtcggatggagggaagaaagatatgaaaaaa
gaaataaatatgagagatcttttagatggtttgataccttattcagaaagacatttctca
aggttagataggttagtacaagatacttatgttttggattatatcttaggagaaatggat
ggggtggtcggtcaggatatggtgaatgaaattggagatgttgtgatgtga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (40)   
   KEGG ORTHOLOGY (1)   
   RefGene (35)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (10)   
   Pfam (10)   
All databases (56)   

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