KEGG   Tremella mesenterica: TREMEDRAFT_68394
Entry
TREMEDRAFT_68394  CDS       T03139                                 
Name
(RefSeq) hypothetical protein
  KO
K10839  UV excision repair protein RAD23
Organism
tms  Tremella mesenterica
Pathway
tms03420  Nucleotide excision repair
tms04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:tms00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    TREMEDRAFT_68394
  09124 Replication and repair
   03420 Nucleotide excision repair
    TREMEDRAFT_68394
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03051 Proteasome [BR:tms03051]
    TREMEDRAFT_68394
   03400 DNA repair and recombination proteins [BR:tms03400]
    TREMEDRAFT_68394
Proteasome [BR:tms03051]
 Eukaryotic proteasome
  Proteasome interacting proteins (PIPs)
   UBL-UBA shuttle proteins
    TREMEDRAFT_68394
DNA repair and recombination proteins [BR:tms03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     XPC-HR23B-CETN2 complex
      TREMEDRAFT_68394
SSDB
Motif
Pfam: UBA XPC-binding ubiquitin Rad60-SLD UBA_3 CUE UBAP-1_UBA2 Rad60-SLD_2 Crinkler BAF
Other DBs
NCBI-GeneID: 18498001
NCBI-ProteinID: XP_007004294
JGI: Treme1_68394
Position
Unknown
AA seq 379 aa
MVKITLKTVQNKLFTVEAEEAETVGDVKRKIEESQTFPVEQQKIIYSGKILQDDTSIGSL
KIKEKDFLVVMVSKPKAAPKPVATPTPTEPPAPVASASEVTPAAPAASPIAGLDTTAAAP
AAETATSATGLSSSSFVTGPALQAAISSMVEMGFEHDQVVRALRASYNNPDRAVDYLMSG
NIPEVEGPAPAATAPPTQTAPTIPTPAAAPSQTPAAPAAQPAPSGSAGSAENLFATVARD
RGTSAPANVPSLEALGNSPQLQRLRQMVQQNPALIGPLLQQVAAHNPALAQLINQHPEAV
YEWLGVGGGEGEDDDDLMGPQTMRIDLTQQEAEAVQRLEQLGFDRQVVLQAYLLCDKNEE
LAANYLFEQGEEDDLPPQL
NT seq 1140 nt   +upstreamnt  +downstreamnt
atggtcaaaataacactgaagacggtgcagaacaaactgttcacagtcgaggcggaggag
gcagagactgtcggcgatgtaaagaggaaaatcgaagaatctcagacctttccggtagag
cagcaaaaaatcatttactctggaaagatattgcaggatgacacttccatcggatctttg
aaaatcaaagagaaagactttttggtcgtcatggtctccaaacccaaagctgctcccaaa
cctgtcgccactccaactccaactgagccccctgccccagtggcgtcagcctcagaagtt
actcccgctgcccctgcggcatctcccattgcagggttggacacgaccgctgctgccccc
gctgctgaaactgcaacatctgctactggactttcatcgagttctttcgtgacaggtcca
gcgttgcaggcggcgatatcgagcatggtggaaatggggttcgaacatgatcaggtagtg
cgtgccctgagagcgagctacaacaatcccgatcgagcggtggattatctcatgagtgga
aacatcccagaagttgaagggccggcaccagcagcgactgctccgcctacacagaccgct
cctactataccaacaccagccgctgctcctagccaaactcctgctgctcctgccgcccaa
cctgctccttccggatcagcagggagtgccgagaatctgttcgccacagtggcacgtgat
agaggaaccagcgctcccgccaatgtacccagtctcgaagctctaggtaactctccacag
ttacaacgtcttcgtcagatggttcagcaaaaccctgcactcataggacctttgttgcag
caggtcgccgctcataatcctgctttggcgcaattaatcaaccaacatcctgaggcggtg
tatgaatggcttggagtaggaggtggggaaggggaggatgacgatgatctaatgggaccg
caaacgatgcggatcgatctgacgcaacaagaggcggaggctgtccagagactcgaacaa
cttggattcgatagacaggtggtccttcaagcttacctgctgtgcgacaaaaacgaagag
ttagctgccaattatctgtttgagcaaggcgaagaggacgatctccctcctcagctgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (65)   
   KEGG ORTHOLOGY (1)   
   RefGene (60)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (10)   
   Pfam (10)   
All databases (83)   

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