KEGG   Thermoanaerobacter mathranii: Tmath_0178
Entry
Tmath_0178        CDS       T01250                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
tmt  Thermoanaerobacter mathranii
Pathway
tmt03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tmt00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Tmath_0178
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tmt03021]
    Tmath_0178
   03019 Messenger RNA biogenesis [BR:tmt03019]
    Tmath_0178
Transcription machinery [BR:tmt03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     Tmath_0178
Messenger RNA biogenesis [BR:tmt03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Tmath_0178
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 ATPase_2 AAA_14 AAA_25 Spore_III_AA NACHT AAA Fan1_SAP
Other DBs
NCBI-ProteinID: ADH59962
UniProt: D7AR53
Position
184022..185548
AA seq 508 aa
MDFDINTLENLSLMELREIAKELGIKSITKYRKQELKEKILEKANQANEKNLIQKDNKKE
EGLNERQTQKSHESAAEKNTDGTLNYDSNVSRNGHVKSISAENAANSLQAQTISAKDILP
IVKELSDPLKELIQTQGDVVAEGILDILPDGYGFLRVENFVQGPKDIYISQSQIRRFGLK
VGDKVRGITRIPREGEKYSAILYVESINGEDPENAKKRIPFDELTPIFPNEKLRLETSPT
EFSMRLVDIIAPIGKGQRGMIVAPPKAGKTTLLKQIANSISHNHPEVILIVLLIDERPEE
VTDMKRSIKGEVVYSTFDEPPEHHIKVAEMVLEHAKRLVEYKKDVVILLDSITRLARAYN
LVTPPSGRTLSGGIDPSALHPPKRFFGAARNIEEGGSLTILATALIETGSRMDDVIFEEF
KGTGNMELHLDRKLQERRIFPAIDIYKSGTRKEELLLTKEELEAMWILRKAMSNLPATEV
TEMLIEKLIRTKSNAEFINMIRAQLYKS
NT seq 1527 nt   +upstreamnt  +downstreamnt
ttggattttgatattaatactttggaaaatttaagtttgatggaactaagagagatagca
aaggagttaggtattaaaagtattacgaaatacagaaaacaagagctaaaagaaaaaatt
ttagaaaaagctaatcaagcaaatgaaaaaaatttaattcaaaaggataacaaaaaagaa
gaaggtttaaatgaaaggcaaactcaaaagtcacacgaaagtgcagcagagaaaaataca
gatggcactttaaattacgattctaatgtatcgagaaatggccatgtaaaatctattagt
gctgaaaatgccgcaaatagcttacaagctcaaacaatttctgcaaaagatattttgcca
attgttaaagaactttctgaccctttaaaagaacttatacagacgcaaggtgatgtagtg
gcagaaggcattcttgatattttgccagatggttacggatttttaagagttgaaaacttt
gttcagggacctaaagatatatatatttctcaatcccaaataagacgctttggcttaaaa
gttggcgacaaagtacgagggatcacaaggattcctcgagaaggggaaaagtattctgcg
attctttatgtggaatctataaatggtgaagatcccgaaaatgccaagaaaaggattcct
tttgatgaattgactcctatttttcctaatgaaaaactgagattagaaacatcccctaca
gaattttctatgagattggtagatattattgctcctataggtaaagggcaaagaggtatg
attgttgcaccgccaaaagcaggaaaaacaactttacttaagcaaattgccaatagcatt
tcacataaccatccagaagttattctcatagtgcttttaattgatgaacgacctgaagaa
gtgactgacatgaaacgctctataaaaggagaagtagtgtattctacttttgatgaaccg
ccagaacatcatatcaaagtggctgaaatggtattagaacatgctaaaagacttgtagag
tataaaaaggatgtggtgattcttttagatagtattactaggttggcgagagcttataat
cttgttacacctccttcaggaagaactctttctggtggtattgacccttctgcattacat
cctccgaaaagatttttcggagcagccaggaatatagaagaaggtgggagtttaactatc
cttgctactgctttgattgaaacgggaagtcgtatggatgatgttatatttgaagaattt
aaaggaacaggtaatatggaacttcatcttgacagaaaattacaggaaagaagaatattc
cctgctattgatatatacaaatcgggtacaagaaaggaagaattgctgcttactaaagaa
gaattggaggccatgtggatattaagaaaagctatgtcgaatttacctgctacagaggtt
acagagatgttaattgaaaaattaatacgaactaaatctaatgcagagtttataaatatg
ataagagcacaattatataaatcttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (21)   

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