KEGG   Trichechus manatus latirostris (Florida manatee): 101355034
Entry
101355034         CDS       T05135                                 
Name
(RefSeq) DNA-binding protein SMUBP-2
  KO
K19036  ATP-dependent RNA/DNA helicase IGHMBP2 [EC:3.6.4.13 5.6.2.3]
Organism
tmu  Trichechus manatus latirostris (Florida manatee)
Brite
KEGG Orthology (KO) [BR:tmu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:tmu03009]
    101355034
   03012 Translation factors [BR:tmu03012]
    101355034
Enzymes [BR:tmu01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     101355034
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     101355034
Ribosome biogenesis [BR:tmu03009]
 Eukaryotic type
  Other ribosome biogenesis factors
   101355034
Translation factors [BR:tmu03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    101355034
SSDB
Motif
Pfam: AAA_11 AAA_12 SMUBP-2_HCS1_1B R3H AAA_30 AAA_19 zf-AN1 ResIII Viral_helicase1 DEAD nSTAND3 AAA_25 UvrD-helicase AAA_16 AAA_22 Helicase_RecD SLFN-g3_helicase IstB_IS21 Flavi_DEAD PhoH DnaB_C Zot AAA ABC_tran ATPase T2SSE SRP54 Herpes_ori_bp UvrD_C_2 DAP3 NTPase_1 AAA_31 AAA_7
Other DBs
NCBI-GeneID: 101355034
NCBI-ProteinID: XP_004383944
UniProt: A0A2Y9E0I8
Position
Unknown
AA seq 1026 aa
MASATVESFVTKQLDLLELERDAEVEERRSWQESISLKELQSRGVCLLKLQVSSQRTGLY
GRLLATFEPRRCGSAAVLPSNSFTSGDIVGLYDAANEGSQLATGILTRVTQKSVTVAFDD
SDDFQLSLEREKSYRLLKLANDVTYKRLKKALLALKKYHSGPATSLIEVLFGGSDPSPAD
VTHPLTFYNTSLDTSQKEAVSFALAQKELAIIHGPPGTGKTTTVVEIILQAVKQGSKVLC
CAPSNVAVDNLVERLAGCEQRVLRLGHPARLLESIQQHSLDAVLARSDSAQIVADIRKDI
DHVFVKNKKTQDKREKSSFRNEIKQLRKELKEREDAAVLEILTLARVVLATNTGASSDGP
LKLLPENYFDVVVIDECAQALEASCWIPLLKARKCILAGDHKQLPPTVISHKAALAGLSL
SLMERLTERHGEGVVRMLTVQYRMHHAIMQWASEALYHGQLTAHTSVAEHLLRDLPGVAA
TEETALPLLLIDTAGCGLFELEGEEEQSRGNPGEVRLVSLHVQALVDAGVPARDIAVITP
YNLQVDLLRQSLAHRYPELEVKSVDGFQGREKEAVILSFVRSNWKGEVGFLAEDRRINVA
VTRARRHVAVVCDSRTVSNHTFLKTLVGHFTEHGEVRTAFEYLDDIVPENYSHESTQGPA
SVKAQGTAPAVRGPPGSGQQTGGRASRAARLDWKKPGAKASDSEATSQPSLNGGVPEPVE
GRDSMEHFKAMITAFVASEETRLEFPASLNARDRMWVHQIAEEMGLRHSSAGEGRGRRVT
VSKSTGPALLPPSPAQAERPPSPAQAERPPSPLQAERPPGPVHAERPPSPARAEHPPSPA
QAERSPSELSNSGGRSRDPLDLKALHLERLQREVGRQEQLAKKGQVGAGTRRLSEKKKRK
EGKGRVAIALPVDEDFDALVSAAIKADNTCGFAKCLASVVTLGQLCLHCSRRYCLSHHLP
EVHGCGERARAHARQRISREGVLYTGSGTKDRALDPARRAQLQRRLDTKLDALTNQRRSK
RKDKEK
NT seq 3081 nt   +upstreamnt  +downstreamnt
atggcttcggcgactgtggagagcttcgtgaccaagcagttggacctgctggagctcgag
agagacgcggaggtcgaggagcgcaggtcctggcaggaaagcatctcgctgaaggaactc
cagagccgaggcgtttgtctcctgaagctgcaggtgtccagccagcgcaccgggctgtac
gggcggctgctggccaccttcgagcccagaaggtgcgggtctgcagcggtgctgcccagc
aacagcttcacttccggcgatatagtggggctgtacgacgccgctaatgaaggcagtcag
ctggccacggggattctgacccgggtcacccagaaatccgtcacggtggcttttgacgac
tccgatgatttccagttgagcttagagcgagagaagtcctacagactactcaaacttgcc
aacgatgtcacttacaagcgactgaaaaaagctctgcttgccctcaagaagtaccattcc
ggcccagcgacctccctcatagaagtgctcttcgggggctcagaccccagtcctgctgat
gtcacacacccgctaaccttctacaacacctccctggacacttcccagaaagaagcggtt
tcttttgcgctggcccagaaagagctcgccatcatccacgggcctcctggcactgggaag
accacgaccgtggtggagataatccttcaggctgtgaagcagggctcaaaggtcctgtgc
tgcgcgccctcgaacgtcgcggtagacaacctcgtggaacgcctggccggctgtgagcag
agggtcctgcgcctgggacacccggcccgcctgctggagtccattcagcagcactccctg
gatgcggttttggcgcgaagtgacagtgcccagattgtcgcagacatcaggaaggacatc
gaccatgtctttgtgaaaaacaaaaagacccaggataagagagagaagagtagttttcga
aatgagattaagcagttaaggaaagaactgaaggagagggaagacgcggccgtgctggaa
atcctcaccttggcccgcgtggtcctcgcaaccaacaccggtgcttcttctgatggccct
ttaaaattgctgcccgagaactactttgacgtggtagtcattgatgagtgtgcccaggcc
ctggaagcgagctgctggattcctttgctgaaggccaggaagtgcatcctggctggggat
cacaaacagctgccccccactgtgatctcacacaaggccgcgctggcggggctgtcgctc
agcctgatggagcgcctgacggagcggcacggcgagggtgtggtgcgcatgctgacagtg
cagtaccgcatgcaccacgccatcatgcagtgggcctccgaggccctgtaccacggacag
ctcacagcacacacctctgtggcggagcacctcctgagggacctcccaggagtggctgct
acagaggagacggccttgcccctgctgctcatcgacaccgccggctgcgggctgttcgag
ctcgagggggaagaggagcagtcgagagggaacccaggtgaggtccgcctcgtcagcctg
catgtccaagctctggtggacgccggcgtcccagcccgcgacatcgctgtcatcacgcca
tacaacctccaggtggacctgctccggcagagcctcgcccacaggtacccggagctggaa
gtaaagtcagtcgatggcttccaggggcgagagaaggaagctgtgatcctgtccttcgtc
agatccaattggaaaggtgaagttggctttcttgctgaggaccggcgcatcaacgtggca
gtcacccgcgcacgccgccacgtggcggtcgtctgtgactcacgcactgtctccaaccac
acgttcctgaagaccttggtgggccacttcacggagcacggggaggtgcgcacggccttt
gagtaccttgatgacatcgtgcctgagaactactcccacgagagcacccagggccccgca
agcgtgaaggcccagggcacagcccctgcggtgagggggcctccgggcagtgggcagcag
acgggaggccgggcctccagagctgccaggctggactggaagaagccgggcgctaaggct
tcagactccgaagccacttctcagcccagcctaaacggaggcgttccagagccagtggag
ggaagagacagcatggagcacttcaaggccatgatcacagcgtttgtggcgagtgaggag
acgcggctggagtttcctgcttccctgaacgcccgtgacaggatgtgggtccatcagatt
gctgaggagatggggctgaggcacagcagtgccggggagggcagggggcggcgcgtgact
gtgagcaagagtactggcccagccttgctgccccccagccctgcgcaggccgagcgtccc
ccaagccccgcacaggccgagcgtccccccagccccctgcaggccgagcgtccccctggc
cctgtacacgctgagcgtccccccagccctgcgcgggctgagcatccccccagccccgcg
caggctgagcgctcccccagtgagcttagcaacagcggtggccgcagcagggacccgctg
gacctgaaggcgctgcacctggaacggctgcagagggaggtgggccggcaggagcagctg
gccaagaaggggcaggtgggcgctgggacacggaggctgtcggagaagaaaaagaggaaa
gaaggaaaaggacgcgtggccatagctttgcccgtggacgaggactttgacgccctggtt
tctgctgccattaaggctgacaacacctgtggctttgccaagtgcttggccagcgtcgtg
accctgggccagctctgcctgcactgcagccgccggtactgcctcagccaccacctgccc
gaggtccacggctgtggggagcgggcacgtgcccacgcccggcagaggatcagccgggag
ggtgtgctttacactggcagcgggaccaaggacagggccctggaccccgccaggagggcg
cagctgcagaggcggctagacacaaagctggacgccctgaccaaccagaggaggagcaag
aggaaagacaaggagaagtga

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