KEGG   Trichechus manatus latirostris (Florida manatee): 101355897
Entry
101355897         CDS       T05135                                 
Name
(RefSeq) collagen alpha-3(IV) chain
  KO
K06237  collagen type IV alpha
Organism
tmu  Trichechus manatus latirostris (Florida manatee)
Pathway
tmu04151  PI3K-Akt signaling pathway
tmu04510  Focal adhesion
tmu04512  ECM-receptor interaction
tmu04820  Cytoskeleton in muscle cells
tmu04926  Relaxin signaling pathway
tmu04933  AGE-RAGE signaling pathway in diabetic complications
tmu04974  Protein digestion and absorption
tmu05146  Amoebiasis
tmu05165  Human papillomavirus infection
tmu05200  Pathways in cancer
tmu05222  Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:tmu00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    101355897
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    101355897
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    101355897
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    101355897
 09150 Organismal Systems
  09152 Endocrine system
   04926 Relaxin signaling pathway
    101355897
  09154 Digestive system
   04974 Protein digestion and absorption
    101355897
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    101355897
  09162 Cancer: specific types
   05222 Small cell lung cancer
    101355897
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    101355897
  09174 Infectious disease: parasitic
   05146 Amoebiasis
    101355897
  09167 Endocrine and metabolic disease
   04933 AGE-RAGE signaling pathway in diabetic complications
    101355897
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:tmu04147]
    101355897
   00536 Glycosaminoglycan binding proteins [BR:tmu00536]
    101355897
Exosome [BR:tmu04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   101355897
Glycosaminoglycan binding proteins [BR:tmu00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   101355897
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 101355897
NCBI-ProteinID: XP_004385891
UniProt: A0A2Y9E2E9
Position
Unknown
AA seq 1670 aa
MLSGTKPRPPALLLRLLLVLLAAAPAAGKGCVCKDKGQCFCDGTKGEKGERGFAGPPGSP
GQKGFPGPEGLPGPQGPKGSPGLQGPTGPKGIRGITGLPGFSGPPGLPGIPGNTGPYGLP
GLPGCNGSKGAQGFPGLPGTPGYLGIPGPVGLKGEKGTPAEGSDIEIDGKGDPGLPGIPG
FQGLPGPPGFPGPMGPPGPPGFLGFPGTMGPPGPKGHMGDNMIGHKGDRGMKGLTGPPGP
PGTVIVTLTGPDNRTELKGEKGDKGAVGKSGPPGPPGLPGESYGSEKGNPGEPGLQGKPG
KDGIPGFPGTQGTKGDRGFPGLRGEYGIKGWKGNIGPPGFPGPTEYYDTYLEKGNEGSPG
PPGPKGARGPQGPSGPPGVPGSPGSSRPGLRGSPGPPGVRGSKGERGPPGNNAVGPPGSQ
GCPGSVGPEGLPGPPGPPGDIVFRKGPPGDSGIPGHLGPPGIPGRDGSKGEPGLLCTQCP
CIPGPPGLPGLPGLDGVKGIPGGRGAAGSKGNPGSPGSMGLPGFPGFPGVQGDPGFKGEK
GETSQPVGQVGAPGDTGSRGHPGRKGLDGIPGNPGLKGLPGPKGQMALSGEKGDQGPPGH
PGIPGPPGLAGPAGPPGSGPQGESGPKGKQGAPGAPGPPGEIGPKGELGVSTPVPGPPGF
PGPPGRSGPHGPPGIPGPMGKCDPGLPGLDGEPGIPGIGFPGPSGPKGDRGFPGAKGSAG
CPGEMGKPGLPGEPGLPGAKGEPGLAMPGEPGEPGFPGERGNAGENGEIGLPGLPGFPGI
PGNQGLDGPRGDPGRPGPHGEKGPPGGCMEGPRGAQGLPGLNGLKGQQGRRGETGSKGDP
GIPGLDRSGLTGEAGPPGMPGHRGEMGPPGQKGYPGNPGFPGPPGQRGMVGMMGFPGNIG
LPGLPGNPGHPGERGSLGIPGIKGEKGPPGVKGEQGNKGIPGPSQISHLPGDKGEAGLKG
FAGNPGQKGNTGIPGLPGLKGFQGLPGPPGPSGPRGDPGSIGNPGEPGPRGVPGSMGSMG
VPGSKGRRGSLGFPGLPGIPGLPGIHGLQGDKGDPGYSEDATPGPKGPQGDPGLPGDMGK
KGERGHPGPPGHSGPAGPEGIPGSSGSPGLPGKPGPDGDLGFKGIKGFPGSPGMRGPPGP
PGFPGSPGPMGVRGNQGHDGIPGPPGEKGEMGLPGALSGPKGNPGAQGAKGDRGAPGLPG
LPGRKGAVGDVGPPGPTGLTGFPGPPGVPGAIIPGQKGNRGPPGSRGNPGEPGPPGPPGS
PVKGIKGDKGFVGKPGPQGPPGTVGDTGLPGHPGPPGTPGLPGLRGDPGFRGFPGMQGEK
GNPGFLGSVGPPGPIGPPGPPGVRGDPGTLEIISLPGSPGPPGPPGGPGMQGEPGPPGPP
GNLGPCGPAGKPGKDGKPGTPGPAGGKGNKGSKGDKGPPGSDGLPGLKGRPGDTGPPATG
TSMRGFIFTRHSQTAAIPSCPEGTEPLYSGFSLLFVQGNERAHGQDLGTLGSCLQRFTTM
PFLFCNINDVCNFASRNDYSYWLSTPALMPMDMAPITGRALEPYISRCTVCEGPAIALAV
HSQTTAIPPCPQGWISLWKGFSFIMFTSAGSEGAGQALASPGSCLEEFRASPFLECHGRG
TCNYYSNSYSFWLASLNPKRMFRKPIPSTVKAGELEKIISRCQVCMKRMH
NT seq 5013 nt   +upstreamnt  +downstreamnt
atgctctctgggacgaagccgaggccgccggcgctcctgctgcggctcctgctggtgctc
ctggcggcggcgcccgcagcgggcaagggttgtgtctgtaaagacaaaggccagtgtttc
tgcgatgggaccaaaggggagaagggcgaaagaggctttgctggaccccccggttctcct
ggccagaaaggattcccaggtcctgaaggcttgcctggaccacagggacccaagggttct
ccaggacttcaaggacccactggtcccaaaggcatcaggggaataactggtttaccagga
ttttcaggtcctccaggacttccaggcatcccaggcaatacaggaccttatggacttcct
ggtttaccaggatgcaatggttctaagggtgcgcaagggtttccaggacttccagggaca
ccaggctatctggggatcccgggtcctgttggtttgaaaggagaaaagggcaccccagct
gaaggaagtgatatagaaattgatggaaaaggtgaccctgggttgccaggaattccagga
ttccagggtttgccaggccctccaggttttcctggacctatgggtccacctggccctcca
ggtttcctgggctttccaggcaccatgggacctccaggacccaagggtcacatgggtgac
aacatgataggacataaaggagaccggggtatgaaaggattgacaggaccccctggacca
ccaggaacagttattgtgacactaactggcccagataacagaacggaactcaaaggggag
aagggagacaagggagcagtgggcaaatccggacctccaggacccccaggactgcctgga
gaatcatacggatcagaaaagggtaatcctggagaacctggcctgcagggaaagcctgga
aaagatggcatccctggcttccctggcacccagggaaccaaaggcgacaggggcttccct
ggattaaggggcgaatatggcattaaggggtggaaagggaacattggccctccaggattc
cctggtccgacagaatattatgacacatacctggaaaagggaaatgaaggaagtccaggc
cccccagggcccaaaggagctcgtggcccacagggtcccagtgggccccctggagttcct
ggaagtcctgggtcatcaaggcctggcctgagagggagccctggaccaccaggcgtgaga
ggaagcaaaggggagcgaggaccgccaggaaacaatgcagtggggcctcctgggtcccaa
ggttgtcctggttctgtaggccctgaagggctgccggggcccccaggtccaccaggtgac
attgtttttcgcaagggtcctcctggagatagtgggattccaggtcatctagggcctcca
ggaatcccaggacgtgatggatccaaaggagagccaggcctcctgtgcacacaatgtccg
tgtatcccagggcctccgggtctcccaggactgccgggactcgatggtgtcaaaggaatt
ccaggagggcgaggtgcagctggctctaaaggaaacccggggtccccaggaagtatgggt
cttccaggatttccaggattcccaggagttcagggtgatccaggatttaaaggagaaaaa
ggtgaaacatctcagcctgtggggcaagtgggtgccccaggagacactgggagcagaggt
catccaggaagaaagggcttggatggaattcctggaaatcccggactgaaaggattaccg
ggacctaaaggccaaatggccctgagtggtgagaagggtgaccagggtcctccagggcat
cctggcatccctgggcccccaggactggcaggaccagctggaccacctggctctggacct
caaggagagtcgggtccaaagggcaagcaaggagctcctggagcccctggaccaccagga
gaaatcggtcctaaaggagaactaggtgtttcaacaccagtcccaggccccccaggattt
ccagggccccctggccgatctggcccccatggtccacctggtatcccaggacccatggga
aaatgtgatccaggtctccctgggcttgatggtgaaccaggaattccaggaattggattt
cctgggccttctggacctaaaggagaccgaggttttccaggggcaaaaggatcagcgggt
tgccctggagaaatgggaaagcctggactgccaggagagccaggccttccaggagccaag
ggagaaccaggactagccatgcctggagaaccaggagaaccaggtttcccaggagaaaga
ggcaatgctggggaaaacggagaaattggactccctggacttccgggtttccctggaatc
ccaggaaaccaagggcttgatggaccacgaggagatccaggaaggcctggaccacatgga
gaaaaaggacccccaggagggtgcatggagggccccaggggagctcaaggactaccaggc
ttaaatggattgaaagggcaacaaggaagaagaggcgaaacaggttccaagggagaccca
ggtataccaggcttggataggtcaggacttactggagaagctgggccaccaggaatgcca
ggtcatcgaggtgagatgggaccacctggtcaaaaaggatacccaggaaatccaggattt
ccagggccaccagggcaaagaggaatggttggaatgatgggctttcctggaaatatcggc
cttccagggcttcctgggaacccaggacacccaggagagaggggtagccttggaattcca
ggaataaagggtgaaaaaggacctccaggagtcaaaggggagcaaggaaataaaggaatt
cctgggccttctcaaatatcccacttaccaggggacaaaggagaagcaggtctcaaagga
tttgcaggaaacccgggtcagaaaggaaacacaggtattccagggttaccaggtttaaaa
ggcttccaagggctgccaggaccaccagggccatcaggccccagaggagacccgggcagc
attgggaatcctggagaaccaggaccacgtggtgtgccagggagcatggggagcatggga
gtgccaggctccaaaggaaggagaggaagtttgggattcccaggtctacctggaatacca
ggcctcccaggcattcatggtctccaaggagataagggagatccaggttattcagaagat
gcaacgccaggaccaaagggaccacagggggatccaggtttgccaggtgacatgggaaag
aaaggagaaagagggcaccccggcccccctggacattcggggcctgctggacctgagggc
atccctggaagttccgggagccctggcctcccaggaaagccaggtcctgatggtgatttg
gggtttaaaggaatcaaaggcttccctggctctccaggaatgagaggccccccaggccct
ccaggattcccaggatctcctgggccaatgggtgtaagaggtaaccaaggacatgatgga
attcctggtccacctggagaaaaaggagaaatgggtttgccgggggcactttctggtcca
aaaggaaaccctggtgctcaaggagccaaaggagacaggggagccccaggcttgcctggc
ttgccaggcaggaaaggggcagtgggagatgttgggccgccaggacccactggcctaaca
ggattcccagggccaccaggtgtcccaggtgcaatcatccctggccaaaaaggaaatcga
ggtccaccaggctcaagaggaaacccaggtgaacctggtccacctggacctccagggagt
cctgtaaaaggcataaaaggagataaaggatttgtgggcaagcctggcccccaaggtcca
cctggaaccgtgggagacacagggttaccaggtcatccgggaccaccaggcaccccaggt
ctcccagggctcagaggtgatcccgggttccgtggatttccgggcatgcaaggagagaag
ggtaatccaggatttctgggatcagttgggcctccagggccaattgggcctccaggacca
cctggtgtacgtggagatcctggcacacttgagatcatctcccttccaggaagcccaggg
cctcctggcccacctggaggaccagggatgcagggagagcctgggccaccagggccacca
ggaaacctaggaccctgtgggccagcaggtaaaccaggcaaggatggaaaacctggaacc
cccggaccagctggaggaaaaggcaacaaaggttctaaaggagacaaagggccacctgga
tcagatggattgccaggtttaaagggaagaccaggagacactggaccacctgccactggg
acatcaatgagaggctttatcttcactcgacatagccaaacagcagcaattccttcatgt
ccagaagggacagagccactctacagtggtttttctctcctttttgtacaaggaaacgaa
cgagcccatggacaagaccttggaactcttggcagctgcctgcagcgctttaccacaatg
ccattcttattctgtaacatcaatgatgtatgcaattttgcatctcgaaacgattattca
tactggctgtcaaccccagccctgatgccaatggacatggctccaattactggcagggcc
cttgagccttatattagcagatgtactgtctgtgaaggtcctgcgattgccttagccgtt
cacagccaaaccaccgccatccctccatgccctcagggctggatttcactctggaaagga
ttttcttttataatgttcacaagtgcaggttcagagggtgctgggcaagcactggcctcc
cccggctcctgcctggaagaattccgagccagtccctttctagaatgtcatggaagagga
acgtgcaactactattcaaattcttacagtttctggttggcttctttaaacccaaaaaga
atgttcagaaaacctattccatcaacagtgaaagctggggagttagaaaagataataagt
cgttgccaggtgtgcatgaagagaatgcattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (11)   
   KEGG PATHWAY (11)   
Genome (1)   
   KEGG GENOME (1)   
Gene (62)   
   KEGG ORTHOLOGY (1)   
   RefGene (58)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (82)   

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