KEGG   Trichechus manatus latirostris (Florida manatee): 101359940
Entry
101359940         CDS       T05135                                 
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
  KO
K14399  polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
Organism
tmu  Trichechus manatus latirostris (Florida manatee)
Pathway
tmu03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:tmu00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    101359940
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tmu03019]
    101359940
Enzymes [BR:tmu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.1  Phosphotransferases with an alcohol group as acceptor
    2.7.1.78  polynucleotide 5'-hydroxyl-kinase
     101359940
Messenger RNA biogenesis [BR:tmu03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor IIm (CFIIm)
     101359940
SSDB
Motif
Pfam: CLP1_P CLP1_N Clp1 ATP_bind_1 AAA_18 MMR_HSR1 TniB AAA_16 AAA_22 nSTAND3 CbiA
Other DBs
NCBI-GeneID: 101359940
NCBI-ProteinID: XP_004389249
UniProt: A0A2Y9E8V7
Position
Unknown
AA seq 425 aa
MGEEANDDKKPTTKFELERETELRFEVEASQSVQLELLAGMAEIFGTELTRNKKFTFDAG
AKVAVFTWHGCSLQLSGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEERGPRVMVV
GPTDVGKSTVCRLLLNYAVRLGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGFSI
QAPLVYHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYH
ALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDER
IREYFYGFRGCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRD
MVHHLLSVSTAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLSPAPRPLPKNFLLIMDIR
FMDLK
NT seq 1278 nt   +upstreamnt  +downstreamnt
atgggagaggaggccaatgatgacaagaagccaacaacaaaatttgaactagaacgagaa
acagaacttcgttttgaggtggaggcgtctcagtcagttcagttggagctcctggctggc
atggcagaaatatttggtacagagctgacccgaaacaagaaattcacctttgacgctggt
gccaaggtggctgttttcacttggcatggctgttctctgcagctgagcggccgcactgag
gtggcttatgtctccaaggatacccctatgctgctttacctcaacacgcacacagccttg
gagcagatgcggaggcaggcagagaaggaagaagaacgaggcccccgggtgatggtagtg
ggccccactgatgtgggcaagtccacagtgtgccgcctgctgctcaactatgcagtgcgt
ttgggccgccgcccgacttacgtggagctggatgtgggccagggctctgtgtccatcccg
ggtaccatgggggccctctacattgagcggccagcagatgttgaagaaggcttctctatc
caggcccctctggtctatcattttggctccaccactcccggcaccaacatcaaactttat
aataagattacatctcgtctggcagatgtgttcaaccaaaggtgtgaagtgaacaggagg
gcctctgtgagtggctgtgtcattaacacctgtggctgggtcaagggctctggctaccat
gccctggtgcatgcagcttcagcttttgaggtagatgtggtggtggttctggatcaagaa
cggctgtacaacgaactgaaacgggacctgccccactttgtacgtactgtgctcctccct
aaatcagggggtgtggttgaacgctccaaggacttccggcgggaatgtagggatgaacgt
atccgtgagtacttctatggattccgaggctgtttctacccccatgccttcaatgtcaag
ttttcagatgtaaaaatctacaaagttggggcccccactatcccagactcctgtttgcct
cttggcatgtctcaggaggacaatcaactcaagctagtacctgtcacccctggccgagat
atggtgcaccacctcctgagtgttagcactgctgagggcacagaggagaacctttcagag
acaagtgttgctggcttcattgtggtgaccagtgtggacctggagcatcaggtgtttact
gtcctctctccagccccccgtccactgcctaagaacttccttcttataatggatatccga
ttcatggatcttaaatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (11)   
   Pfam (11)   
All databases (31)   

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