KEGG   Trichechus manatus latirostris (Florida manatee): 101360684
Entry
101360684         CDS       T05135                                 
Name
(RefSeq) superkiller viralicidic activity 2-like 2
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
tmu  Trichechus manatus latirostris (Florida manatee)
Pathway
tmu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tmu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    101360684
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tmu03019]
    101360684
   03041 Spliceosome [BR:tmu03041]
    101360684
   03009 Ribosome biogenesis [BR:tmu03009]
    101360684
   03016 Transfer RNA biogenesis [BR:tmu03016]
    101360684
Enzymes [BR:tmu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     101360684
Messenger RNA biogenesis [BR:tmu03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     101360684
Spliceosome [BR:tmu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    101360684
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    101360684
Ribosome biogenesis [BR:tmu03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    101360684
Transfer RNA biogenesis [BR:tmu03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    101360684
SSDB
Motif
Pfam: DSHCT MTR4_beta-barrel DEAD Helicase_C MTR4-like_stalk ResIII nSTAND3 AAA_22
Other DBs
NCBI-GeneID: 101360684
NCBI-ProteinID: XP_023590730
UniProt: A0A2Y9R5H4
Position
Unknown
AA seq 978 aa
MADAFGDELFSVFEDDSTTAAGTKKDKEKGKWKGPPGSSEKAGKCVDVKLQSESTNSGKK
RDADFESTDEPIYGKKIRIEESITEDLSLADLMPRVKVQAVETVEGCTHEVALPADEDYL
PLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQ
RVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVM
REVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQP
CHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKG
RKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEV
FSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATE
TFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKM
SPTIGKQLLKVTKLRFCPFTKNFRNTLQEPLQNQFLREERMYLGCDLCKVYNFLRLYIYL
FTEVKKSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVK
VKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKPD
EKGEMQVVPVLVHLLTAISSVRLYIPKDLRPVDNRQSVLKSIQIETDIKSAKRELKKART
VLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQ
ATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLSSFKP
HLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFA
EGITKIKRDIVFAASLYL
NT seq 2937 nt   +upstreamnt  +downstreamnt
atggcggacgctttcggggacgaacttttcagcgtgttcgaggacgactcgaccactgca
gccggaaccaaaaaagacaaggagaaggggaaatggaaagggcccccagggtcttcagaa
aaggccgggaaatgtgttgatgttaaattacaatcagagtcaactaatagtggaaaaaag
agagatgcagatttcgaaagcacagatgaacccatttacggaaagaagatcagaatagaa
gagtcaataactgaagacttaagtttggcagacctgatgcccagagttaaggtacaagca
gttgaaactgttgaaggatgtacccatgaggttgcacttcctgcagatgaagattattta
ccacttaaacctcgagttggaaaagctgcaaaggaatacccattcattcttgatgctttt
caaagggaagccattcagtgtgttgataataatcagtctgttttagtatctgcacataca
tcagcaggaaaaactgtatgcgctgagtatgctattgcattggccttaagggagaaacag
cgtgtaatatttaccagcccaattaaggctctgagtaaccagaaataccgtgaaatgtat
gaagaatttcaagatgttggtctgatgactggagatgttactattaatcctacggcatct
tgtcttgttatgaccacagagattttgagaagtatgctgtacagaggttctgaagttatg
cgagaagttgcttgggtcatatttgatgaaattcattacatgagagattcagagcgtggt
gtggtatgggaagaaactattattttgcttcctgataatgtccactatgtctttctttcg
gctactattccaaatgctcgacagtttgctgaatggatttgccacttacacaagcagcct
tgccatgtaatttacacagattatcggcctactccattgcaacattacatttttccagca
ggaggagatggcctccaccttgtagtagatgaaaatggtgacttcagggaagataatttt
aatactgcaatgcaagtgcttcgagatgcaggtgatttggcaaaaggagaccagaagggg
cggaaaggtggaacaaaaggaccatcaaatgtgttcaagattgtgaagatgattatggaa
agaaattttcaacctgtaattattttcagttttagtaagaaagattgtgaagcttatgca
cttcagatgaccaaattagattttaacacagatgaagagaagaagatggttgaagaagta
ttcagtaatgcaattgactgcttgtctgatgaagataaaaagctccctcaggttgaacat
gtacttcctcttttgaagcggggcattggaattcaccatggaggtttacttcctatttta
aaagaaaccattgaaattctcttttctgaaggattgataaaggccttgttcgccacagag
acttttgctatgggaattaacatgccagctagaactgttttatttacaaatgcccgcaaa
tttgatgggaaagatttccgatggatatcctctggtgaatacattcaaatgtctggtcgt
gcgggaaggaggggaatggatgacaggggaattgtaattcttatggtggatgaaaagatg
agcccaacgattggaaaacaactacttaaggtaactaagctaagattctgtccctttaca
aagaattttagaaacacacttcaggagccacttcaaaaccagtttcttagggaagagagg
atgtatcttgggtgtgatttgtgtaaggtatataattttttgagattgtacatctattta
tttacagaggtaaagaagtcagaagaacagtataataaaatagtaattcccaatgaagaa
agtgtagtcatctattataagattagacaacagctcgccaaattgggtaaagaaattgaa
gaatatattcacaaaccaaaatactgtttaccatttctacaaccaggtcgtttggtaaag
gtgaagaatgaaggagatgactttggctggggagttgtggtgaacttctcaaaaaagtca
aatgttaagcctaattctggtgaactggatcctttatatgtagtagaagtacttctgcgc
tgtagcaaagagagcttgaagaattcagctactgaggctgcaaaaccagctaaacctgat
gagaaaggagagatgcaggttgttccagttttggtgcatctcctgactgctatcagcagt
gttaggctttacattcctaaagaccttcgaccagtggacaataggcagagtgttttaaaa
tcaatacagattgaaacagatattaaatccgcaaagcgagaactgaagaaagcaagaact
gtcctacaaatggatgaactcaaatgccgcaaacgagttttaagaaggctgggatttgct
acttcttctgatgtcatagagatgaaaggaagagtggcttgtgagataagcagtgctgat
gagctgcttctaaccgagatgatgtttaatggccttttcaatgatctatctgcagaacag
gcaacagcgttactaagctgctttgtgtttcaagagaattctagtgagatgcccaaatta
acagagcagttagcaggaccacttcgtcaaatgcaggaatgtgctaaaagaattgcaaaa
gtttcagcagaggccaaattagaaatcgatgaagaaacttatctaagctcattcaaacct
cacctaatggatgtagtatatacctgggctactggagctacatttgcccatatctgcaaa
atgacagatgtctttgaaggcagcataatccgttgtatgaggcgcctggaagaattgctt
cgtcagatgtgtcaagcagcaaaagccattggaaacactgagctggagaataaatttgca
gaaggaatcaccaaaatcaagagagatattgtgtttgctgcaagcctctacttatag

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (40)   

Download RDF
DBGET integrated database retrieval system