KEGG   Thermotoga maritima Tma200: THMC_1504
Entry
THMC_1504         CDS       T03901                                 
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
  KO
K03040  DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Organism
tmx  Thermotoga maritima Tma200
Pathway
tmx03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:tmx00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    THMC_1504
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tmx03021]
    THMC_1504
   03400 DNA repair and recombination proteins [BR:tmx03400]
    THMC_1504
Enzymes [BR:tmx01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     THMC_1504
Transcription machinery [BR:tmx03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     THMC_1504
DNA repair and recombination proteins [BR:tmx03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      THMC_1504
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_A_CTD RNA_pol_L RNA_pol_L_2 HHH_5
Other DBs
NCBI-ProteinID: AKE27361
Position
complement(1474035..1475045)
AA seq 336 aa
MIEFVIPKKLKVEEEREERDYYYSRFSLSPLERGYAITIGNALRRVLLSSIPSLAIVGVR
FIKPEKYHEYDYIEGVKEDILDIILNLKKVQFRINVTVKGTIKMEVEKKGPGELVAGDIK
TPAGIEVVNPDLHIATLNSKADLFFEVYAEVGKGFVPVSEREERPDVGWIPIDGVFSPVI
KVNFLTENVRVGKRTDYDKLILEIWTKKSIRPEEALRKAADILINHFKIVTEGLPELKIS
EEYIITSEEEEAEVPASEHEEEHRENSDVYNRKIDELELSVRSLNCLKRAKIETIGDLLS
KTEEELLKIKNFGQKSLDEVKEKLKEKFGLELRKGE
NT seq 1011 nt   +upstreamnt  +downstreamnt
atgatagaatttgtgataccaaaaaaattgaaggtggaggaagagcgggaagaaagagat
tattactactcgagattttcgctttctccgcttgaaagaggatatgccatcacgatagga
aacgcattaaggagagttcttctctcctccataccttctctcgcaatcgttggagtgaga
ttcataaagccagaaaagtaccatgaatacgattacattgaaggagtaaaagaagacata
ctggatataatcctgaacttgaagaaagttcaatttcggatcaacgtgactgtgaaaggt
acaataaagatggaagtggagaagaaaggaccgggtgaactcgtcgcgggtgatataaag
acaccggctggtatcgaagtagtgaatccggatctgcacatcgccaccctgaattctaaa
gcagatcttttcttcgaagtctacgcagaagtgggaaaaggatttgttcctgtgtctgag
agggaagaaagacctgacgtgggatggataccaatagatggagttttcagtcctgtgatc
aaagtgaactttctgacagaaaacgttcgtgttggaaaaaggacggattacgacaagctc
attcttgaaatctggacgaagaaatcgataagacctgaagaggccctcagaaaggctgcg
gacatcctgataaatcatttcaaaatcgtgacggaagggttgcctgaactgaagatctcc
gaggaatacatcatcacatccgaggaggaagaagcagaagtccctgccagtgaacacgaa
gaggaacacagggaaaactcagatgtgtacaacagaaagatagatgaactcgaactttca
gtcagatctctcaactgtttgaagagagccaaaatagaaacgatcggggatcttctcagc
aaaaccgaggaagagcttttgaagataaagaattttggtcagaaatctctcgatgaggtc
aaggagaaactgaaagaaaaattcggtcttgagctcaggaagggggaatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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