KEGG   Tetraodon nigroviridis (spotted green pufferfish): GSTEN00029719G001
Entry
GSTEN00029719G001 CDS       T04346                                 
Name
(GenBank) unnamed protein product
  KO
K10643  CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
Organism
tng  Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tng00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GSTEN00029719G001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:tng03000]
    GSTEN00029719G001
   03019 Messenger RNA biogenesis [BR:tng03019]
    GSTEN00029719G001
   04121 Ubiquitin system [BR:tng04121]
    GSTEN00029719G001
Enzymes [BR:tng01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     GSTEN00029719G001
Transcription factors [BR:tng03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    GSTEN00029719G001
Messenger RNA biogenesis [BR:tng03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     GSTEN00029719G001
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     GSTEN00029719G001
Ubiquitin system [BR:tng04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    GSTEN00029719G001
SSDB
Motif
Pfam: zf-RING_4 RRM_1 zf-C3HC4_3 zf-C3HC4_2 zf-RING_2 zf-CCCH_2 Med7 RDD1 DZR_2 zf-UDP Torus zf-C3HC4 Rtf2
Other DBs
NCBI-ProteinID: CAG08675
UniProt: Q4RSF7
Position
13
AA seq 652 aa
MSHSPDMKDDPMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEDIQRIKNEKKQKQNEKKQKVTENRKHLASVRVVQRNLVFVVGLSQRL
ADPEVLKRPEYFGRFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQDLYKINPSFLQPPACGTEKTKNKTNSTQRYFLVCSLTVWTSCILSLSLCLSLCQIPPS
DSPSPPPGLTKPSLVVPISVSDLTARSPFEGAAAESQSLFSDNSNFRHPNPLPAGLPPFP
TSPRSSSDWPMTPEPQSLFTSETIPVSSSTDWQAAFGFGSSSKQQDDDLGFDPFDVTRKA
LADLIEKELSVQDQSPTSPGPFSQGGGLPPPPNPSASHHFPSSLPRLPQLHHRPVYNSFS
FPSGQNSQASQQQAATRHPWMGVPTRNNLAHLNHSAGAVSHSNFLDLNLPPQHNTGLGGI
PISGIPAAAGNSLDSLQDDNPPHWLKSLQALTEMDGPAGSAVPTPQPLHTGLLDAHLPLH
HRAAGGWAPYLPPPTANPASQFHSPPPGFQTAFRPPGQPSTELLQSAAVDRH
NT seq 1959 nt   +upstreamnt  +downstreamnt
atgtcccacagccctgacatgaaggacgaccccatggagtgccccctgtgcatggaaccg
ctggagatcgacgatgtcaacttcttcccgtgcacctgtggctatcagatctgccgcttc
tgttggcaccgcatccgcacagatgaaaacgggctgtgtcctgcgtgtagaaagccatac
ccagaagaccctgcggtgtataagcctctctcacaggaggatatccagaggataaagaac
gaaaagaagcagaagcagaacgagaagaagcagaaagtgacagaaaaccgcaagcatctg
gccagcgtcagagtggtccagagaaacctggtgtttgtggtggggctctcgcagcgtctc
gctgacccggaagtcctaaagcgaccagagtattttgggagatttgggaaaatccataaa
gtggtcatcaacaatagcacatcttatgctggttcacaggggcccagtgctagtgcttat
gtcacttatattcgctctgaagatgctctaagagcaatacagtgcgtgaacaatgtggtc
gttgatggcagaacactaaaggcttctttaggtacaacaaagtactgcagttatttcctt
aaaagtatgcagtgtcccaaacctgattgtatgtatctacacgagctgggagacgaggct
gctagctttactaaagaggagatgcaggcgggaaaacatcaagaatatgagcagaagctt
cttcaagacctctataaaattaaccctagctttctacaacctccggcatgtggaacagag
aagacgaaaaataaaaccaactccacacaaaggtacttccttgtttgctctttaactgtt
tggactagttgcatcctctcactgtctctgtgtctctctctctgccagatacctcccagt
gactccccctctcctcctcctggtttgaccaagcccagcctggtggtgcccatcagcgtc
tcagacctcacggctcgttcgcccttcgagggggcggcggccgagtcccagtctctcttt
tcagacaacagtaacttcaggcatcctaaccccctccctgcagggctgcctcccttcccc
acctccccccgcagcagctccgactggcccatgactcctgaaccgcagagccttttcact
tccgagacgataccagtgtcctcgtccacagactggcaggcggcgttcggcttcggctca
tccagcaaacagcaggatgacgacctgggcttcgaccctttcgacgtcactcgcaaggcc
ttggctgacctgatcgagaaggagctgtctgtgcaggaccagagccccacctccccggga
cccttcagccaggggggcggcctgcctcctcctcccaaccccagcgcctcccatcacttc
cccagcagcctaccacgcctcccccagctccaccacagaccggtctacaactccttcagt
ttccccagcggtcagaacagccaggccagtcagcagcaggcagccaccagacacccctgg
atgggcgtcccgacaagaaacaacctcgcacacttgaaccactcagccggtgccgtctcg
cacagtaacttcctggaccttaacctgccccctcaacacaacacaggactgggagggatc
cccatttcaggcatcccagccgcagcgggcaacagtttggactctcttcaggatgacaac
cccccacactggctcaaatccctgcaggcgctcacagagatggacggccctgccggctca
gcggtgcccacgccccagcccctccacaccggcctcctggacgcccacctccccctccat
cacagagccgcgggcggctgggcaccctacctgcccccccccacagccaaccccgccagc
cagttccactcccctccccccggcttccagaccgccttcagaccccctggacagcccagc
acagagctgctacagagtgctgctgtggaccgccactga

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Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (13)   
   Pfam (13)   
All databases (25)   

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