KEGG   Tetraodon nigroviridis (spotted green pufferfish): GSTEN00032679G001
Entry
GSTEN00032679G001 CDS       T04346                                 
Name
(GenBank) unnamed protein product
  KO
K12618  5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
tng  Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03008  Ribosome biogenesis in eukaryotes
tng03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tng00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    GSTEN00032679G001
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GSTEN00032679G001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tng03019]
    GSTEN00032679G001
   03009 Ribosome biogenesis [BR:tng03009]
    GSTEN00032679G001
   03016 Transfer RNA biogenesis [BR:tng03016]
    GSTEN00032679G001
   03036 Chromosome and associated proteins [BR:tng03036]
    GSTEN00032679G001
Messenger RNA biogenesis [BR:tng03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     GSTEN00032679G001
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     GSTEN00032679G001
Ribosome biogenesis [BR:tng03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    GSTEN00032679G001
Transfer RNA biogenesis [BR:tng03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    GSTEN00032679G001
Chromosome and associated proteins [BR:tng03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    GSTEN00032679G001
SSDB
Motif
Pfam: XRN_N XRN_M XRN1_D2_D3 XRN1_D1 SH3_12 Dicer_dimer
Other DBs
NCBI-ProteinID: CAG10909
UniProt: Q4RL23
Position
undetermined
AA seq 1574 aa
MGVPKFYRWISERYPCLSEIVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYVEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEEKIKKALDKGE
VLPTEARFDSNCITPGTDFMARLQEQLEYFVHSKLSTDKLWQNVRVYLSGHETPGEGEHK
IMEFIRSENNGPGHDPNTRHCLYGLDADLIMLGLTSHEPNFSLLREEVRFGGKKSQKRIT
APEETTFHLLHLSLMREYIDYEFSVLRNHLGSTYDLERIIDDWILMGFLIGNDFIPHLPH
LHISHDALPLLYKTYISVLPSLGGYLNENGNLNLKNFEKYLEKLSEFDREHFSEVFVDLK
WFESKVGNKYLNEAAGLAAEKEAASKAADQQEAAPGLTAAEKPGDEEEEEEDLFETEFRQ
YKRTYYMTKMGVDVVSDDFLALQARCYVEGIQWILHYYYHGVQSWSWYYPYHYAPFLSDI
KNVAELKLTFDLEKPFMPFQQLLAVLPAASMELLPEAYRHLMTSENSPIIEYYPHDFKTD
LNGKQQEWEAVVLIPFIDEVRTHTHTHTHTHTHTHLTLTLTLTLLACARCGSVHTTHTMS
PSGSGRSSDATWQQRGKEHIPMDAWQVPLNHVRRAIDRSALYFCGFPTLQHIKHKFYRKK
IGVVVFQQSSRGENTILDILPSNEADTVCDDVALELLGISVFVNWPHLEEARIVAVSDGD
VRFCLEEPPGVQRLYSRASTPPPTKVTCLSDKEQKEWLKDVQGITEHFLRRKGIVVNETA
VLLYGQLLTGQKYVPKANGVVEVEKQWAKQVLPFAYQTVVKDIKAIYSSLPCYKSLEELF
PPTTTVFMVGNPYYGAMGEVQDSSDVIKDGRVRVVFNIPHEPQLETLIQNQHKYCVKYSP
GYVLASRLGISSNLVSRFSGSIFIGRGSKKDPCGEHRSNIGLNLKFNKKNEEVPGYTKRT
EKEWLYSAAVEEVLAEYLDRSRSPLRKFLGVHLAGFCSRLKGAFCLSGSLKCFTPYPRTF
MMTFSMKMTSGLSWTRTGKINTRTNGLLASSRVTSDWFSFLNRAEKVAEITTWLRSHPVS
SATRTSCELQVLDAAIVEKIEEAVEKAKVGEASRRDALVKSFNSNLCLSLQVKKGTKKVR
VTVKPHLLFRPLEQQQGVVPDPDAEYRLFDRVVNVRESFTVPLGLRGTIIGIKGAEREAE
VLYEVLFDEEFAGGLHIRSASCRAYRLPPCALINLCHGSRADHTSHRLTAVVKPQPAAAG
SLQAQRQLGSLNHSPRSPFIPTQVRQEEQTSPSWLGYERSHMRCSAPLQHHRQGATKAGP
QGSRNAPSTGLMQKQARVRLSSSSCGGKTRRGGAEALFLSEQGHVQRGVADSAELGASSQ
AACSLAQQRESCAAAWEAGPQQDCSSCCHQTVEEGGAQVCPALRELAQQDLLVKKSKLEP
LLHVQAKREFEELIASLKISKEEQQRPLPAAAPPSSQSDGPLSPQSFAMKGTLVLKEMLK
IDGAGTEGSSPQVSELVHVCVGSGMAPPEFSYSTQQGLITCQVKLSNGLVVHGPQSPSET
EAKEHAAFIALQRL
NT seq 4722 nt   +upstreamnt  +downstreamnt
atgggagtacctaaattttaccgatggatatcagagcgttacccttgtctgagtgagatt
gtcaaggaacatcagattccagagtttgacaatctctatctggacatgaatgggatcatc
caccagtgctcccaccccaacgacgaggatgtccactttcgcatttccgaggagaagatt
ttcgcagacatcttccactacgtggaggttctcttcaggatcatcaagccacgcaaggtc
ttcttcatggcggtggacggcgtggcgcccagggcgaagatgaaccaacagagaggacgg
aggttcaggtcagctaaggaagcagaggaaaaaatcaaaaaagctctggataaaggagag
gttcttcctacagaggcgcgctttgactccaactgtatcactcctggaaccgacttcatg
gccagactccaggagcagctggaatattttgtccacagcaaactctccaccgacaagctg
tggcagaacgtcagggtctatctctccggccacgagactccaggcgaaggagagcacaag
atcatggagttcatccgctcggagaacaacgggccaggccacgaccccaacacccgccac
tgcctttacggcctggacgctgacctgattatgttgggtttaaccagccacgagcccaac
ttctccctgctcagagaagaggtccgttttggagggaaaaagtcccagaagaggataacg
gctccagaggagaccaccttccacctgctgcacctgtctctcatgagggagtacatcgac
tacgagttctctgtgctcaggaaccacctgggttcaacgtatgacctggagaggataata
gatgactggattctaatgggcttcctcattggaaatgatttcatccctcaccttcctcat
ctgcacatcagccacgacgccctgccgttgttatacaagacctacatcagcgttctgccc
agcctggggggttatttaaatgaaaacggtaacctgaacctcaagaactttgagaaatac
ctggagaaactctcggagttcgacagggaacacttcagcgaggtctttgtggacctgaag
tggttcgagagcaaagtcggtaacaagtacctgaacgaagcggctggactggcagcagag
aaggaagcagccagcaaggctgcagaccagcaggaggctgctccgggtctgacggctgca
gagaagcccggagacgaggaggaagaggaggaagacttgtttgagaccgagttcaggcag
tacaagcgcacctactatatgaccaagatgggagtggatgtggtgtctgacgacttcctg
gctctgcaggccagatgttatgttgaagggatccagtggatcctgcactactattaccac
ggagtccagtcgtggagctggtactacccctaccactacgcgcccttcttgtccgacatc
aagaatgtagcggagctaaagctgacctttgacctggagaagccgttcatgcccttccag
cagctgctggccgtcctacctgctgctagcatggagctgctgcctgaggcttacaggcac
ctgatgaccagtgagaattctcccattatcgaatactaccctcatgacttcaagactgac
ctcaatggcaagcagcaggaatgggaggctgtggtcctgattcccttcatagatgaggta
cgcacacacacacacacacacacacacacacacacacacacacacctcacactcacactc
acactcacactgttggcatgtgccagatgtggcagtgttcacaccacacacaccatgtct
ccgtctggatctggtcgatcatctgatgccacgtggcagcagcgtgggaaggagcacatc
ccgatggacgcctggcaagtccccctgaaccacgtcagaagagccatcgaccgctcagct
ctctacttctgtggttttcccacgctgcagcacataaaacacaagttttacaggaagaag
attggagtggttgtgtttcagcagagcagccgaggggagaacaccatcctggacatccta
cccagcaacgaagccgacacggtgtgtgatgacgtggctctggagcttctgggtatatca
gtgtttgtcaactggccacatctggaggaggctcgcatcgtggctgtgtctgacggagac
gtcaggttttgtctggaggaaccgcctggtgtccaaagactgtacagcagagcttctacc
cctccccccaccaaggtcacctgcctgtcagacaaggagcagaaggagtggctgaaggac
gtccagggaatcaccgaacacttcttgaggaggaagggcatcgtggtcaacgagacagcg
gtgctcctctacggccagttactcacgggccagaaatatgtccccaaagccaacggcgtg
gtggaagtggagaagcagtgggccaagcaggtcctcccgtttgcctaccagaccgtggtc
aaggacattaaggccatttactcgtctctgccctgctacaagagcctggaggagctcttc
cctccaacaaccaccgtcttcatggtggggaacccctactacggcgccatgggggaggtg
caggattccagtgatgtcatcaaagatggccgagtgcgtgttgttttcaacataccccac
gagccccagctggagacgctgatccagaatcagcataagtactgtgtgaagtacagtcct
ggatatgttctggcgtcccgcctgggcatcagcagcaacctggtttctcgcttctcagga
agcatcttcatcggcagaggctctaaaaaggatccctgtggggagcaccgaagcaacatt
ggcctcaacctgaagttcaacaagaagaacgaggaggttcctggttacaccaagagaacg
gagaaggagtggctctactctgctgctgtggaggaggtgctggcggagtacttggacagg
tcaagatcacctctcagaaaatttcttggtgttcatctggcaggtttctgttcccgtttg
aaaggagctttctgcctttcaggttctctgaagtgtttcactccgtatccaagaacattc
atgatgacattttctatgaagatgacatctggcctgagctggaccagaacgggtaagata
aacacacgcacaaatgggcttttggcctcatcccgagtgacctcggactggttttcattc
ctgaacagagcggagaaggtcgccgagatcacgacatggttgaggagccacccggtgagc
tcggccacgagaacgtcctgcgagctgcaggtgctggacgctgccattgtggagaagatt
gaggaggcggtggagaaagccaaggtgggggaggcgagccgacgtgacgctctggtaaaa
tccttcaactcaaacctctgtctctctctgcaggtgaagaagggcaccaagaaggtgcgc
gtgacggtgaagcctcatctccttttcagacctttggagcagcagcaaggtgtggttcca
gacccggacgcagagtaccgtctctttgacagggtggtcaatgtcagggagagcttcact
gtccctctgggcctgcggggaaccatcattggcatcaaaggagccgagcgggaggcagag
gttctctacgaggtgctctttgacgaagagtttgccggaggcctccacatcaggagcgcg
tcctgtcgcgcctaccgcctccccccctgtgctctgattaacctctgccatggatccaga
gcagaccacacctcccacaggctcaccgccgtggtcaaaccccagcccgctgcagccggc
agcctccaggcgcagcggcagctggggagcctgaaccactcgccacgctcacccttcatt
cccacccaggtgagacaggaggagcagacatcgccgtcctggctcggatatgagcgctca
cacatgcgctgctctgctcctctgcagcatcacaggcagggagcgacgaaggccggcccc
cagggcagcaggaacgccccctctacgggtctgatgcagaaacaggccagggtaagactc
tcctcctcctcctgtggtgggaagacgagacggggtggtgctgaggctcttttcctctca
gaacaaggacatgtacagcgaggtgtggcagactctgcagagctcggggcctcctcacaa
gccgcctgctcactggcacaacaacgggaatcgtgtgcagcagcctgggaagcaggaccc
caacaggactgctccagctgctgtcatcagactgttgaagaaggaggagcccaagtgtgt
ccagccctcagagaactcgcccagcaagatctgcttgtgaaaaaatcgaaattagagccg
cttctccatgttcaggctaagcgagaatttgaggagctgatagcgagtctgaagatctcc
aaggaggagcagcagaggccactccccgctgctgccccgcccagcagccagtccgacggg
cccttgtctcctcagtcctttgccatgaaggggaccctggttctgaaggagatgctgaag
atcgatggtgctggcacagaaggctcctccccccaggtttccgagctggtgcacgtctgc
gtggggtcaggaatggccccgcccgagttcagctacagcacgcagcagggtctcatcacc
tgtcaggtgaagctgtccaacgggctggtggtccacggtccgcagagtccctcagagact
gaggccaaggaacacgctgccttcattgctcttcagagactg

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (18)   

Download RDF
DBGET integrated database retrieval system