KEGG T02408: TVNIR

Thioalkalivibrio nitratireducens: TVNIR_0138

Entry

TVNIR_0138 CDS T02408

Gene name

recD_[H]

Definition

Exodeoxyribonuclease V alpha chain (EC:3.1.11.5)

Orthology

K03581

exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]

Organism

tni Thioalkalivibrio nitratireducens

Pathway

tni03440

Homologous recombination

Class

Genetic Information Processing; Replication and repair; Homologous recombination [PATH:tni03440]

SSDB

Motif

Pfam:

AAA_30 UvrD_C_2 Viral_helicase1 AAA_19 Helicase_RecD AAA_11 AAA_22 AAA_28 DUF2075 Mg_chelatase AAA_25 UvrD-helicase NTPase_1 AAA_18

Other DBs

NCBI-GI:

430759475

NCBI-GeneID:

14274212

UniProt:

L0DU14

Position

132334..134448

AA seq 704 aa
MSRPVAAAALASADALLDLLDRWVEHGWLRALDRALARFLREQVPEAAPLLLLGAALASH
QLGRGHACLDLEAALDAPDRTLSLPPDGEPGEDPPVRPAALLAPVTLQDWTASLDHPALV
APAAGATPLVLDRGRLYLRRLWECEQRIAESVAERVAWFSELRSGLDPAAMRTWLDHLFG
ARTEREIDWQRAACALAAAGAFGVITGGPGTGKTTTVVRLLALLQALQLERASALPLRIR
MAAPTGKAAARLNASVAGAVHALSLPDDECGARIRAAIPAEVSTVHRLLGSRPGSRRYRH
HAGNPLPLDVLVVDEASMIDMELMTSVVQALPTAARLILLGDKDQLASVEAGAVLGEICA
RAGAGHYSPATSRWLEAVSGERIPDRLRNPAGGPLDQHVVMLRRSYRFGESSAIGRLARS
VNAGDAEAARAIVSGSGALPDLAAVSLNGPEDAVFERYVLHGRDDAARDRRRDDLPTGQA
HYLRLMRSLDPGDDAVPDATNRWAGQVLDAHSGFQLLSAVRRGPWGVETLNRRIEAALRS
EGLIPSSGIWYAGRPVIVTANDYGLGLMNGDIGVTLARPMAEADGRRVRALRVAFPAGDG
SGRVRWFVPSRLVNVETVYAMTVHKAQGSEFDHAALLLPERENPVLTRELLYTAITRARC
WFTLIEPRAGVLEQAVRRRVLRGTGLGDALRGRMSGQHISGGGR

NT seq 2115 nt +upstreamnt +downstreamnt
atgagccgacccgtggccgctgcggccctagcgtcggccgacgcgctgctggacctgctg
gatcggtgggtcgagcatggctggctgcgggccctagatcgtgcgctcgcacgcttcctg
cgcgagcaggtaccggaggccgcgccgctgctgctgctcggcgcggcactagcgagccat
caactgggccgggggcacgcctgcctggacctggaagcggcactggacgccccggaccgg
acgctgtcgctgccgccggatggcgaaccgggagaggatcccccggttcggccggcggcg
ctgctcgcgccggtcacgctgcaggactggaccgcatccctggatcacccggcactggtg
gcccctgccgccggggcgacgccgctggtgctggaccgcggccggctctacctgcgccgg
ctctgggaatgcgagcagcgtatcgcggagtcggtcgctgaacgcgtcgcctggttcagc
gagctgcgttccggtctggatccggccgcgatgcggacctggctcgatcacctgttcggg
gcccggacggagcgcgagatcgactggcagcgcgcggcctgcgcgctggcggcggccgga
gccttcggcgtaatcaccggcggaccgggcaccggcaagaccaccacggtggtgcgcctg
ctcgcgctgttgcaggcactgcagctcgagcgcgcgtctgcgttgccgctgcgcatccgc
atggccgcgcctacgggcaaggccgctgcccgcctgaacgcctcggtggccggcgccgtg
catgcgctcagcctgccggacgacgaatgcggggcgcggatccgcgccgcgatcccggcc
gaggtcagcacggtgcaccggctgctggggagccggcccggcagccgccggtaccggcac
catgcgggcaacccgctgccgctggatgtgctggtggtcgacgaggcgtcgatgatcgac
atggagctgatgacctccgtggtccaggcgctgccgaccgcggcgcggttgatcctgctg
ggggacaaagatcagctcgcatcggtggaggccggcgcggtgctcggcgagatctgtgca
cgcgccggtgccgggcattactcgcccgcgacgagccgctggctggaggcggtcagcggc
gagcggatccccgataggcttcggaacccggccggcggaccgctggaccagcacgtcgtg
atgctccggcgcagttaccgtttcggcgagagcagcgcgatcggccgtctggcccgctcg
gtgaacgcgggtgacgcggaggcggcccgggccatcgtgtcgggcagcggggcgttgccc
gatctcgccgcggtctcgctgaacggtcccgaggacgcggtattcgagcgctatgtgctt
cacggccgcgacgatgccgcgcgggaccgacgaagagacgacctgcccaccggtcaagcg
cactacctgaggctgatgcgcagcctggatccgggcgacgacgcggtgccggacgcgacc
aatcgctgggccgggcaggtcctggatgcgcattcggggtttcagctgctgagcgcggtg
cgccgtggcccctggggggtcgagacgctgaaccgccgcatcgaggccgcactgcgctcg
gagggcctgattccctcgagcgggatctggtacgcgggacgaccggtgatcgtgaccgcg
aacgactacgggctcggcctgatgaacggagatatcggggtcacgcttgcccgccccatg
gcagaggcggatggacgccgggtgcgtgcgctgcgcgtcgcgtttccggctggcgacggc
agcggccgggtgcgctggttcgtgccgagccggctggtgaacgtcgagacggtctacgcg
atgacagtgcacaaggcgcagggatcggagttcgaccacgcggccctgctgctgcccgag
cgtgagaacccggtcctgacgcgggaactgctgtacacggcgatcacgcgcgcgcggtgc
tggttcaccctgatcgaaccgcgggcgggggtcctggagcaggccgtccgccgccgcgtg
ctacgcggtaccggcctcggcgacgcgctgcgcgggcgcatgtcggggcagcacatctcg
ggtggcggacgatga

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (14)   
   Pfam (14)   
All databases (23)   

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