KEGG   Thalassolituus oleivorans MIL-1: TOL_3456
Entry
TOL_3456          CDS       T02529                                 
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
tol  Thalassolituus oleivorans MIL-1
Pathway
tol03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:tol00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    TOL_3456
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tol03021]
    TOL_3456
   03400 DNA repair and recombination proteins [BR:tol03400]
    TOL_3456
Enzymes [BR:tol01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     TOL_3456
Transcription machinery [BR:tol03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     TOL_3456
DNA repair and recombination proteins [BR:tol03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      TOL_3456
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Peptidase_M23
Other DBs
NCBI-ProteinID: CCU73846
UniProt: M5E8Z9
Position
complement(3618588..3622811)
AA seq 1407 aa
MKDLVNFLRNQNNADEFDAIRIGLASPAMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERILYYESFVVTEPGMTTLEVGQLLSDEQYYEAIEEFGDEFEAKM
GAEAIQMLLGQIDLPEEVQRLREEIPGTTSETKIKKLSKRLKILEAFHNSGNDPQWMIMS
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPQ
LRLHECGLPKKMALELFKPFIFSKLEHRGLATTIKAAKKMVERETPEVWDILADVIREHP
VMLNRAPTLHRLGIQAFEPQLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMATNNVLSPANGEPIIVPSQDVVLGLYWMIRDRINAKGEGMMLADLDEVTRAYQTG
AAHLQAKVKVRIKETSIDINGGSETITRVVDTTIGRALLFRIVPDGLSFDLVNQPMKKKA
ISNLINTAYRRVGLKDTVIFADQVMYTGFQFATRSGSSIGVNDFVIPDEKAEIVANADAE
VKEIESQFASGLVTHGEKYNKVIDIWSRANELVAKAMMDNLGKEKVIDRDGNEVDQESFN
SVYMMADSGARGSPAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFTSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTDRDCGTEHGLQMTPLIEGGDVVVALGGRIL
GRVIATDVYKPGSVGDIVVPAGTLIDEAWVQKIEAEGIDEVKVRSAITCESRVGICAACY
GRDLGRGHQVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSSAADSVQVKNNGTVR
LHNLKTVTRDNGNLVAVSRSGSIALADEHGRERELYKLPYGAVISVVDGEKVQAGQKVAS
WDPHTHPIVTEVKGRIEFVGMDEGITINRQTDELTGLSNIEVIDPKDRPAAGKDIRPMVK
LVDASGNDVSLPGTNAPAQYMLPPNALVNHENGTEVSVGDIIARIPQETSGNKDITGGLP
RVADLFEARKPKEPAILAEITGTVSFGKETKGKKRLVITPNDGGDVYEELIHKWRHMNVF
EGEQVEKGEVISDGPMNPHDILRLQGVGQLAMYITNEVQEVYRLQGVGIDDKHIEVIVRQ
MLRKVLIHENGDSSFIPGDQVEYTNYLTENEKLVEAGKIPAKSERVLLGITKASLATESF
ISAASFQETTRVLTEGAVTGKVDNLRGLKENVVVGRLIPAGTGLAYHADRKRKRLNRDNE
RRKALPEGLSVSAEDMEAKLSEAFSDK
NT seq 4224 nt   +upstreamnt  +downstreamnt
atgaaagacttagtcaattttctgcgcaatcagaacaacgctgacgagtttgacgccatc
cgcatcggcctcgcctctccagcaatgattcgctcatggtccttcggtgaagttaaaaag
ccggaaaccattaactatcgtacgttcaagcctgagcgtgatggtttattttgcgcacgc
atctttggtcctattaaggactatgaatgcttgtgtggtaagtacaagcgccttaagcac
cgcggagtaatctgtgagaagtgtggcgttgaagttactcaagccaaagtacgtcgtgag
cgtatgggtcacatcgacctagcgtcaccggttgcacatatttggttcttgaagtcactg
ccatctcgtatcggtttgatgctggatatgaccctgcgtgacatcgaacgaattctttac
tacgaatcattcgttgtaactgagccaggcatgaccacgcttgaagtgggtcagttgctg
tctgatgaacagtactacgaagcgattgaagaattcggtgatgagttcgaagctaaaatg
ggtgctgaagccatccagatgctattgggccaaatcgatctaccagaagaagttcagcgc
ctgcgtgaagaaattccgggcacgacttctgaaactaagatcaagaagctatcaaagcgt
ctaaaaatacttgaggccttccataattctggaaacgatcctcagtggatgatcatgtct
gtattgccagtattaccaccggatttgcgtccattggtaccactggatggcggtcgtttc
gctacttcggatctaaatgatctgtatcgtcgcgttattaaccgtaacaaccgtctaaag
cgtttgttagagcttagcgctccagacatcatcgtgcgcaacgaaaagcgtatgctgcaa
gaagcggtagatgccctgttggataacggtcgtcgcggtcgtgcgattacgggttctaac
aagcgtcctttgaagtcactggctgacatgatcaaaggtaagcaaggtcgtttccgtcaa
aacttacttggtaagcgtgttgactactcaggccgttcggttattaccgtaggtccgcag
ttgcgtctgcatgagtgtggtctgccgaagaaaatggcacttgaattgttcaagccgttt
atcttcagcaaactagagcaccgcggtttagccacaaccattaaagctgcaaagaaaatg
gttgagcgcgaaacaccagaagtttgggatatcttggctgacgtgattcgcgaacatcca
gtcatgctgaaccgtgcaccaacattgcaccgtttgggtattcaggcgttcgaaccacaa
ttgattgaaggtaaagcgattcagttgcacccacttgtgtgtgcggcatacaacgccgac
ttcgatggtgaccaaatggcggtacacgtaccgttaacaatcgaagcacagctagaagcc
cgtgctctgatgatggccaccaacaacgtattatcgcctgccaacggtgaacctatcatc
gttccttcacaggacgttgtattgggcttgtactggatgattcgtgatcgcatcaacgcg
aaaggtgagggcatgatgctcgccgatcttgatgaagtgactcgtgcttaccagactggc
gctgctcacctgcaagcaaaagttaaagtacgtatcaaagaaacgtctatcgacattaat
ggtggttctgaaaccatcactcgtgttgttgatacgacgattggtcgtgcattgttgttc
cgtattgtgccagacggcttatctttcgacttggttaaccaaccaatgaagaagaaggca
atctcaaacttgattaacacggcgtaccgtcgcgttggtctgaaagatactgttatcttc
gctgaccaagtgatgtataccggcttccagtttgcgactcgttctggttcgtctatcggt
gttaacgatttcgttatcccagatgaaaaagcggaaatcgttgctaacgcggatgcggaa
gtaaaagaaattgaaagccaattcgcttcaggtcttgtgacccacggcgaaaagtacaac
aaggttatcgacatttggtcgcgcgctaacgaattagtagcgaaggcgatgatggataac
ttgggtaaagaaaaggttattgaccgcgacggcaacgaagtggatcaagagtctttcaac
tctgtatacatgatggccgactcaggcgctcgtggtagcccggctcagatccgtcagttg
gcgggtatgcgtggtctgatggcgaaaccagacggttccatcatcgaaacgccaatcgtg
gcgaacttccgtgaaggtttgaacgtacttcagtacttcacctcgactcacggtgctcgt
aaaggtttggccgatacggcattgaagacagctaactccggttatctgactcgtcgtttg
gttgacgtagcccaagatttggttgttaccgaccgtgattgtggcactgagcacggctta
cagatgactccgctaattgaaggcggtgacgttgttgtggcattgggtggtcgtattctt
ggtcgtgttatcgcgactgacgtatacaagccaggcagtgttggcgatatcgtcgtgcca
gcgggtactttgattgatgaagcttgggtacaaaagatcgaagctgaaggtatcgacgaa
gtgaaggtgcgctctgcgattacctgtgaatcacgcgttggtatttgtgcggcttgttac
ggtcgtgaccttggtcgtggtcatcaggttaacgttggtgaagcagtcggcgttatcgct
gctcagtcgatcggtgagcctggtacacagttaaccatgcgtacgttccacattggtggt
gcggcatcacgttcttctgctgctgatagcgttcaagttaagaacaacggtaccgttcgt
ttgcataacttgaaaactgtaacgcgtgataacggcaacctagttgcagtatcgcgttca
ggttcgattgccttggcagacgaacacggtcgtgagcgtgagctatacaagctgccttac
ggcgcggttatcagtgttgttgacggcgaaaaagtacaagctggccagaaagtggcaagc
tgggatccacatactcacccaatcgtgaccgaagtaaaaggtcgtatcgaattcgtgggt
atggatgaaggtatcaccatcaaccgtcaaactgacgagttgacgggtctatccaacatc
gaagttattgatccaaaagatcgcccagcggcgggtaaagatattcgtccgatggttaaa
ctggttgatgcatcaggcaacgacgtttctctaccaggcacaaacgcaccagcacaatat
atgctgccgccgaatgccttggttaaccatgagaacggtactgaagtatcagtgggtgac
atcattgcgcgtatcccacaagaaacctctggtaacaaggacatcacgggtggtctgcca
cgcgttgctgacttgttcgaagcacgtaagccgaaagagcctgcaattcttgcagagatc
accggtactgtgagcttcggtaaagaaaccaaaggtaagaagcgtttggtaattactccg
aacgatggtggtgacgtttatgaagaactgatccacaagtggcgccacatgaacgtgttc
gaaggtgaacaggttgagaagggtgaggttatttccgatggtccgatgaacccacacgat
atcttgcgtctgcaaggtgtaggtcaattggccatgtacatcactaacgaagtacaggaa
gtttaccgtctacaaggcgttggcatcgatgacaaacatatcgaagttatcgttcgtcaa
atgttgcgtaaggttctaatccatgaaaatggcgacagctctttcattccgggtgatcag
gtggaatacaccaattacctaactgaaaatgagaagttggtagaagctggcaagattccg
gcgaagagcgagcgcgtgctattgggtattaccaaagcatcgttggcaaccgaatcgttt
atctctgcggcatcgttccaggaaacaactcgtgtactcaccgaaggtgcagtaaccggt
aaagttgataacttgcgcggtctgaaagaaaacgtggttgtgggtcgtttgatccctgct
ggtacaggtttggcttatcacgctgatcgtaagcgtaagcgcctgaatcgcgataacgaa
cgtcgtaaagcattgccagaaggtctcagcgtttcagctgaagacatggaagcaaaactg
agcgaagcgttcagcgataaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (85)   
   KEGG ORTHOLOGY (1)   
   RefGene (82)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (100)   

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