KEGG   Treponema pallidum subsp. pallidum Nichols: TP0105Help
Entry
TP0105            CDS       T.pallidum                             
Definition DNA polymerase I (PolA)
Orthology K02335  DNA polymerase I [EC:2.7.7.7]
Pathway tpa00230  Purine metabolism
tpa00240  Pyrimidine metabolism
tpa01100  Metabolic pathways
tpa03030  DNA replication
tpa03410  Base excision repair
tpa03420  Nucleotide excision repair
tpa03440  Homologous recombination
Class Metabolism; Nucleotide Metabolism; Purine metabolism [PATH:tpa00230]
Metabolism; Nucleotide Metabolism; Pyrimidine metabolism
[PATH:tpa00240]
Genetic Information Processing; Replication and Repair; DNA
replication [PATH:tpa03030]
Genetic Information Processing; Replication and Repair; Base
excision repair [PATH:tpa03410]
Genetic Information Processing; Replication and Repair; Nucleotide
excision repair [PATH:tpa03420]
Genetic Information Processing; Replication and Repair; Homologous
recombination [PATH:tpa03440]
Genetic Information Processing; Replication and Repair; DNA repair
and recombination proteins
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Pfam: DNA_pol_A 5_3_exonuc_N 3_5_exonuc 5_3_exonuc TSNR_N Exonuc_X-T
PROSITE: DNA_POLYMERASE_A
Motif
Other DBs NCBI-GI: 15639099
NCBI-GeneID: 2610831
UniProt: P74933
Position 115806..118799 Genome map
AA seq 997 aa AA seqDB search
MQEKKTLYLLDAYGLIYRSYHAFARAPLINDSGANVSAVYGFFRSLHTLLCHYRPRYFVA
VFDSLTPTFRHVQYPAYKAKRDKTSAELYAQIPLIEEILCALGITVLRHDGFEADDLIAT
LAKRVAAEHCHVVIISSDKDVLQLVCDTVQVLRLDIDHKWTCCDAAYVQQRWTVMPTQLL
DLFSLMGDSSDNVPGVRGIGPKTAAHLLHCFGTLDGIYRHTYSLKEALRTKIVCGKKDAF
FSRSLIELRDDVPCVFSLEDSCCIPLDVTSAARIFVREGLHALAQQYRACVQEIDTEATN
DTLQMTESSVLTSGRCANECFLSQVEGRASTPEVNSVLKSELKTSAVSGAIPIENRDLRQ
DVMLARSAGHYRGVTDPVELKRIIDCACANGVVAFDCETDGLHPHDTRLVGFSICFQEAE
AFYVPLIVPDVSLHTESTQCTCARSTNVETEKECTEQHGVSASAVQDPAYVQAVMHQLRR
LWNDETLTLVMHNGKFDYHVMHRAGVFEHCACNIFDTMVAAWLLDPDRGTYGMDVLAASF
FQIRTITFEEVVAKGQTFAHVPYECAVRYAAEDADITFRLYHYLKLRLETAGLLSVFETI
EMPLLPILARMEEVGIFLRKDVVQQLTRSFSDLIQQYEHDIFSLAGHEFNIGSPKQLQTV
LFQELHLPPGKKNTQGYSTDHSVLKKLARKHPIAEKILLFRDLSKLRSTYTESLAKLADQ
TGRVHTSFVQIGTATGRLSSRNPNLQNIPIKSTEGRKIRQAFQATVGHELISADYTQIEL
VVLAHLSQDRNLLNAFRQHIDIHALTAAYIFNVSIDDVQPAMRRIAKTINFGIVYGMSAF
RLSDELKISQKEAQSFIYRYFETYPGVYAFSTQVAEQTRKTGYVTSLAGRRRYIRTIDSR
NTLERARAERMALNTQIQSSAADIVKIAMIAIQRAFARRPLRAQLLLQVHDELIFEAPAA
ETAIVKEILFAEMEHAVELSIPLRIHVESGNSWGDFH
NT seq 2994 nt NT seq  +upstreamnt  +downstreamnt
atgcaagagaaaaaaacgctttaccttcttgatgcctacggacttatttatcggagttac
cacgcgttcgcgcgtgcgccgttgattaacgacagcggtgcgaatgtttctgccgtatat
ggtttttttcggagtttgcacacgctcctgtgtcactatcgaccccgttattttgttgct
gtttttgattctctcacgcctacctttcggcacgtacagtacccagcctataaggcaaaa
agggataagacttctgcagagctttatgcgcaaattccccttatcgaagaaatcctgtgt
gcactgggcattacagttttgcgtcatgacggctttgaagctgacgacctcattgcaacc
ctagcaaaacgagttgcggctgagcactgtcatgttgtgattatctcctcagataaagat
gtacttcagcttgtgtgtgatacggtgcaagtgctcagacttgacatagatcataagtgg
acatgttgcgacgctgcgtacgtacagcaacggtggacggtcatgccaacacaattactt
gatttgttctctctcatgggagattcctccgacaatgtgcctggtgtgagagggattggt
cctaagacggctgcacatcttctccactgttttggcacacttgatggtatttatcgtcat
acctattccttaaaagaagcgctgcgcacgaagatagtgtgtgggaagaaagatgcattt
ttttctcgttcactcattgagttgcgtgacgatgtaccatgtgttttttcgctcgaagat
tcctgttgtattccgctcgatgtaacgtctgctgcacgtatttttgtgcgagaaggattg
catgcgcttgcacaacaatatcgtgcttgtgtgcaagaaatagatacagaagcaacaaac
gatacattacaaatgacagagtcttctgtgctcacgtctggtcgatgtgcaaatgagtgt
ttcttatctcaggtagaagggagggctagtacaccggaggtgaactccgtattgaagtcg
gagttgaagacgagtgctgtgtctggcgccatacctatagaaaatagagatcttaggcag
gatgttatgcttgcacgcagtgcaggtcattatcgtggtgttactgaccctgtagaactt
aaacgtattattgattgcgcgtgtgcgaatggtgtggtcgcgtttgattgtgaaacggat
ggattgcatccgcacgatacacgtctggtcggattttcgatctgctttcaggaagcagag
gctttttatgttcctcttattgttccggacgtttctcttcataccgagtcaactcagtgt
acatgtgcacgtagcactaatgtcgagactgaaaaggagtgcacagaacagcatggggta
tctgcatctgctgtgcaggatccggcatatgtccaagctgtcatgcaccagcttcgacgt
ctttggaatgatgagacgctcacacttgttatgcataatggaaagtttgattatcacgtt
atgcatcgtgcaggcgtttttgagcactgtgcatgtaatattttcgatacgatggttgca
gcttggttgctggatcccgatcgcggtacatacggtatggatgtacttgccgcatcattc
tttcagatcagaacgattacatttgaagaagtggtagcaaaagggcaaacctttgcgcac
gtcccttatgagtgtgcagtccgctatgcagcggaggatgcagatattacttttcgttta
taccattatttaaaactccgcttggaaacagcaggattgctttctgtgtttgagaccata
gaaatgccgcttttgcctatcctagcacgtatggaagaagtggggatttttttacgtaag
gatgttgtgcagcagctcactcgatctttttcagatttgatccagcagtacgagcacgat
attttttctcttgccggtcatgaatttaatattggttctccgaagcaactgcagacagtc
ctttttcaagaattacatttaccgcccggtaaaaagaatactcaaggttattctactgat
cattctgtattgaagaaacttgcacgtaagcatcccattgcagaaaaaatattgctcttt
agagatctttcaaagttacgttcgacgtataccgaatcgcttgcaaaacttgctgatcaa
acagggcgtgtacatactagctttgtgcaaattggtaccgcaactggaaggctttcgagt
agaaatccaaatttacaaaacattcccattaaaagcacagaaggaagaaaaataaggcag
gcgtttcaagctactgttgggcatgagttaatttcggcagactatacacaaatagagctg
gtcgtgttggcccatctatctcaagatagaaatcttctcaatgcatttcgacagcacatt
gatattcatgcattgactgctgcatatattttcaatgtgtctatagacgatgtacaacct
gcaatgagaagaatcgcaaaaactattaactttggaatcgtgtatggaatgagcgctttt
agattgagtgacgaacttaaaatttctcagaaggaagcgcagagcttcatttaccgttat
tttgaaacgtacccgggggtgtatgcttttagtacacaggttgcagagcagacacgtaaa
accggctatgtgactagcttggctggaagacgacgctacatccgtactatcgatagtcgc
aatacgcttgagcgcgcgcgtgccgaacgtatggcgttgaatactcaaattcagagttct
gcggcggatattgtgaaaattgccatgatagcaatccagcgtgcgtttgcgcgccgaccg
ttacgtgcacaattgttgctgcaggtacacgatgaattgatttttgaggcgccagctgct
gagacagcgatagtgaaagaaattctctttgctgagatggaacatgctgttgagctctcg
atcccgctgcgtatacacgtggagtctggaaatagttggggtgattttcattag
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