KEGG T.pallidum: TP0241

Treponema pallidum subsp. pallidum Nichols: TP0241

Entry

TP0241 CDS T.pallidum

Gene name rpoB

Definition DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)

Orthology K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]

Pathway tpa00230 Purine metabolism
tpa00240 Pyrimidine metabolism
tpa01100 Metabolic pathways
tpa03020 RNA polymerase

Class Metabolism; Nucleotide Metabolism; Purine metabolism [PATH:tpa00230]
Metabolism; Nucleotide Metabolism; Pyrimidine metabolism
[PATH:tpa00240]
Genetic Information Processing; Transcription; RNA polymerase
[PATH:tpa03020]
Genetic Information Processing; Replication and Repair; DNA repair
and recombination proteins

SSDB

Motif Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2
RNA_pol_Rpb2_1 RNA_pol_Rpb2_45
PROSITE: RNA_POL_BETA NLS_BP

Other DBs NCBI-GI: 15639233
NCBI-GeneID: 2611158
UniProt: O83269

Position 245585..249121

AA seq 1178 aa
MSARVCKTHRVYVGRDVRNFMDIPDLIEIQLRSYDTFLHGARNTPSGADTLISGTREELG
LEDVFKTTFPIESSTGDMTLEYQSYSLDEKNIKFSEAECKQKGLTYAIPLKALVDLRFNN
TGEIRRKDIYMGDIPKMTERGTFIINGAERVVVSQIHRSPGVVFSHEKDKEGREVFSSRI
IPYRGSWLEFEIDQKKDLIYAKLDKKRRILGTVFLRALHYETREQIIEAFYAIEKTPVCQ
DRAEYELLTGKILARSVTVENEQGETRVLYKAGEKIHPHVIDDLLQNGICEVYIINLEAE
GSLRSAVVINCLEREEMKFSKSGAQDELSREEALCIVYSALRPSDPMTMDAAEKDLQTMF
FSPRRYDLGRVGRYKLNKKFRSDSPTTECTLTLDDIVNTMKFLIRMYSGDAQEDDIDHLG
NRRIRSVGELMTNTLKTAFLRMERIAKERMSSKETETIKPQDLISIKPIMAAIKEFFGAS
QLSQFMDQVNPLAELTHKRRLNALGPGGLSRERAGFEVRDVHYTHYGRMCPIETPEGPNI
GLIVSMANYARVNGYGFLEVPYVRVRDGVVTKEIEYLDAMDEDRYYIGQDSTAVGPDGVI
RVDHVSCRHRGDYSTRSPKDIQYMDVSPKQIISVSASLIPFLEHDDANRALMGSNMQRQG
VPLIFPEPPRVGTGMEEKCAYDSGVLVKAKQDGTVAYVSSEKIVVCSAAASGEEQEVVYP
LLKYQRTNQDTCYHQRPIVHVGDRVQVGDALADGPATYRGELALGRNILVGFVPWNGYNY
EDAILISHRVVKEDMFTSVHIKEFSTEVRETKLGSERMTNDIPNKSEKNLDNLDAEGIIR
IGSKVRAGDVLIGKITPKSESETTPEFRLLNSIFGEKAKEVRDSSLRVPHGVEGTVIDVQ
RLRRSEGDDLNPGVSEVVKVLIATKRKLREGDKMAGRHGNKGIVARILPEEDMPYLDDGT
PLDVCLNPLGVPSRMNIGQILESELGLAGLRLDEWYESPVFQSPSNEQIGEKLMQAGFPT
NSKVMLRDGRTGDYFQNPVFVGVIYFMKLAHLVDDKMHARSTGPYSLVTQQPLGGKAQFG
GQRLGEMEVWALEAYGAANTLQELLTIKSDDMHGRSKIYEAIVKGEASSPTGIPESFNVL
VQELRGLALDFTIYDAKGKQIPLTERDEEMTNKIGSKF

NT seq 3537 nt +upstreamnt +downstreamnt
atgtcagcacgagtttgcaaaacacacagagtgtacgtgggaagggatgtcaggaatttt
atggacatcccggatctcatcgaaatccagcttcgatcttacgacacctttctgcatggg
gcccggaatacaccgtccggcgccgacacccttatctccggtactagagaggagctcggc
ctcgaagacgtgttcaagactacctttcctatcgagagctctacgggggacatgacgctc
gagtaccaatcatactcccttgatgagaaaaacatcaagttctccgaggcggagtgtaaa
caaaagggtttgacgtacgccattccgctgaaggcgcttgttgatttacgtttcaataat
acgggggagattaggcgcaaagacatttatatgggagatatccccaagatgactgaacgc
ggcacctttatcatcaacggtgcggagcgtgtggtggtatcccagatccatcgttcccct
ggtgttgtcttttctcatgagaaggacaaggaaggacgggaggtattctccagccgcatt
attccgtaccggggaagctggcttgaatttgaaattgatcagaaaaaagatctcatctat
gcaaagcttgataaaaagagacgtatcctaggcaccgtgtttttgcgtgcgttgcactac
gaaacgcgtgagcagatcatcgaggccttttacgccatagaaaagacgcctgtttgtcag
gatcgtgcggagtacgagctgctcacaggtaagatcctagcacgatcggtgacggtggaa
aatgagcagggtgaaacccgggtgttgtacaaagcaggagagaaaatccatccccatgtc
atcgatgatctgctgcaaaacggcatatgtgaggtctacattattaaccttgaagcggaa
ggttcgttgcgttctgcggtcgttatcaattgtcttgaacgagaggaaatgaagttctct
aagtcgggtgcacaggacgagctttcgcgtgaagaggcactgtgtattgtatactcagcg
ctaagaccaagcgatcctatgaccatggacgcggcggaaaaagatttgcagacaatgttt
ttctccccacgtcgctatgatttagggcgggtggggcgctacaagctgaacaagaaattt
cgctctgactcgccgactactgagtgcacgctcaccctcgatgatatcgtaaataccatg
aaatttctcatcagaatgtatagcggtgatgcacaggaagatgatatcgatcacctgggc
aaccgtcgtattcgttcggtgggggaattaatgaccaatacgttaaaaacggcctttttg
cgcatggaacgtattgcgaaggagcgtatgagttctaaggaaacggaaacgatcaagccg
caggatctcatttccataaaacctatcatggctgcgattaaggagttctttggtgcaagt
cagctttctcagttcatggatcaggtcaatccgctggcggagttgacacacaagcggcgt
ttgaacgcacttggtcctggtggactttcaagggagcgtgctgggtttgaggtacgcgat
gtgcactacacgcactacggtcggatgtgtcccattgagacccccgaaggaccaaatatc
ggtttaattgtttctatggccaattacgcacgcgttaacgggtatgggttcttggaggtg
ccgtatgtacgggtgcgtgacggagttgttacgaaagagattgagtacctggatgctatg
gacgaggatcgctactacattgggcaggattctacggcggtaggaccggacggggtcatc
cgtgtagatcatgtctcttgtcggcaccggggggattacagtacgcgtagtcctaaggat
atccagtatatggatgtttcccccaagcagataatttctgtttctgcttctctcataccg
tttcttgagcatgatgatgctaaccgtgcgttaatggggtcgaacatgcaacggcaggga
gtgccgcttatttttcctgaacccccgcgcgtgggtacaggcatggaagagaagtgtgca
tatgactctggagtgctggtgaaggcaaagcaagacggaacggttgcctacgtttcctca
gagaagatagtggtttgttccgccgcggcgtctggggaagagcaggaggtcgtgtatccg
ttacttaagtatcagcggacaaatcaggatacctgttaccaccagcggccaatagtgcac
gtgggagatcgggtacaggtaggagatgcgcttgcagacggtcctgcaacgtatcgaggg
gagcttgcgcttggcagaaacattctagttggttttgtgccgtggaacggttacaactac
gaggatgccattttgatttctcaccgggtggtaaaggaggatatgttcacctcggttcac
atcaaagaattttctactgaggtgcgtgaaaccaagctgggttctgaacgaatgacgaat
gatatcccgaataagtctgagaagaatctggataatttggatgcagaggggatcattcgt
attgggtcaaaggtgcgtgcgggagacgtgcttatcggaaagattacgccaaaaagcgag
tctgagacgacgccagagtttaggctgctgaattctatttttggggagaaggcgaaggaa
gtgcgtgattcttctctacgtgtgccgcatggagttgagggtacagtcattgacgtgcag
cgactcaggcgttcggagggagatgatttaaaccccggggtgtcagaggtggtgaaggtt
cttatcgctaccaagcgtaagctgcgtgaaggggataaaatggccggtcgccacggtaac
aagggtatcgttgcgcgcatccttcctgaagaagacatgccgtatctggatgatggtacc
ccgcttgatgtctgtttgaacccgctcggtgtaccttctcgtatgaacataggacagatt
cttgaatctgaattgggacttgcggggttgcggcttgacgaatggtatgagtctcctgtc
tttcaatctccaagcaacgagcagattggggaaaagttgatgcaggcaggttttccgact
aattcaaaagtgatgctgcgtgacggacgcacgggggattattttcaaaaccctgtattt
gtgggggttatttactttatgaagcttgcgcatctagtggatgacaaaatgcacgcccgc
tctacaggtccatattcgcttgtgacgcagcaacccttagggggtaaagcgcagtttgga
gggcagcgtctcggggaaatggaggtgtgggcgcttgaagcctacggcgcggcgaatacc
ctgcaggagttgctaacgattaaatcggatgatatgcacgggcgttctaaaatttatgag
gcaattgtaaaaggggaggcttcgtctcctaccggtattcctgaatcttttaacgtgttg
gtgcaggagctgcggggacttgcgctcgactttacgatttacgatgcgaagggcaagcag
attccgctcactgagcgcgatgaagaaatgacgaataagattggctctaaattttaa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (8)   
   Pfam (6)   
   PROSITE (2)   
All databases (22)

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