KEGG T.pallidum: TP0242

Treponema pallidum subsp. pallidum Nichols: TP0242

Entry

TP0242 CDS T.pallidum

Definition DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)

Orthology K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]

Pathway tpa00230 Purine metabolism
tpa00240 Pyrimidine metabolism
tpa01100 Metabolic pathways
tpa03020 RNA polymerase

Class Metabolism; Nucleotide Metabolism; Purine metabolism [PATH:tpa00230]
Metabolism; Nucleotide Metabolism; Pyrimidine metabolism
[PATH:tpa00240]
Genetic Information Processing; Transcription; RNA polymerase
[PATH:tpa03020]
Genetic Information Processing; Replication and Repair; DNA repair
and recombination proteins

SSDB

Motif Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3
RNA_pol_Rpb1_4 Peptidase_M23 Apocytochr_F_C Biotin_lipoyl
PROSITE: NLS_BP

Other DBs NCBI-GI: 15639234
NCBI-GeneID: 2611178
UniProt: O83270

Position 249134..253384

AA seq 1416 aa
MKDIRDFDSLQIKLASPDTIRAWSYGEVKKPETINYRTLRPEREGLFCERIFGTTKEWEC
FCGKFKSIRYRGVICDRCGVEVTHFKVRRERMGHIELATPVSHIWYYRCVPSRMGLLLDL
QVIALRSVLYYEKYIVIEPGDTDLKKNQLLTETEYNDAQERYGGGFTAGMGAEAIRTLLQ
NLDLDALVAQLREKMMEKGAKSDKRLLRRIEIVENFRVSGNKPEWMILSVIPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVIHRNSRLIRLMELKAPDIIIRNEKRMLQEAVDALFDNSK
RKPAIKGASNRPLKSISDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLWQCGLPTK
MALELFKPFIMKKLVEKEIVSNIKKAKMLVEQESPKVFSVLDEVVKEHPVMLNRAPTLHR
LGIQAFEPVLVEGKAIRLHPLVCKPFNADFDGDQMAVHVPLTQAAQMECWTLMLSNRNLL
DPANGRTIVYPSQDMVLGLYYLTKERSLPEGARPRRFSSVEEVMMAAEKGVIGWQDQIQV
RYHKCDGQLVVTTAGRLVLNEEVPAEIPFVNETLDDKRIRKLIERVFKRQDSWLAVQMLD
ALKTIGYTYATFFGATLSMDDIIVPEQKVQMLEKANKEVLAIASQYRGGHITQEERYNRV
VEVWSKTSEELTSLMMETLERDKDGFNTIYMMATSGARGSRNQIRQLAGMRGLMAKPSGD
IIELPIRSNFKEGLNVIEFFISTNGARKGLADTALKTADAGYLTRRLVDIAQDVVVNEED
CGTINGIEYRAVKSGDEIIESLAERIVGKYTLERVEHPITHELLLDVNEYIDDERAEKVE
EAGVESVKLRTVLTCESKRGVCVCCYGRNLARNKIVEIGEAVGIVAAQSIGQPGTQLTMR
TFHVGGTASSTTEENRITFKYPILVKSIEGVHVKMEDGSQLFTRRGTLFFHKTLAEYQLQ
EGDSVQVRDRARVLKDEVLYHTTDGQTVYASVSGFARIIDRTVYLVGPEQKTEIRNGSNV
VIKADEYVPPGKTVATFDPFTEPILAEQDGFVRYEDIILGSTLIEEVNTETGMVERRITT
LKTGIQLQPRVFISDESGNALGSYYLPEEARLMVEEGAQVKAGTVIVKLAKAIQKTSDIT
GGLPRVSELFEARRPKNAAVLAQISGVVSFKGLFKGKRIVVVRDHYGKEYKHLVSMSRQL
LVRDGDTVEAGERLCDGCFDPHDILAILGENALQNYLMNEIRDVYRVQGVSINDQHIGLV
VRQMLRKTEVVSVGDTRFIYGQQVDKYRFHEENRRVEAEGGQPAVARPMFQGITKAALNI
DSFISAASFQETNKVLTNAAIAGSVDDLCGLKENVIIGHLIPAGTGMRRYRQVKLFDKNK
RDLDVQMEEVIRRRKLEEEALAQAVAGMEGEPEGEA

NT seq 4251 nt +upstreamnt +downstreamnt
atgaaggatatccgggattttgacagtttacagataaagcttgcctcccctgataccatt
cgggcatggtcctatggagaggtgaaaaagcctgagacaattaattaccgcacgttgcgt
cctgaacgtgaagggcttttttgtgaacgcatttttggtactacaaaggaatgggaatgc
ttttgtggaaagtttaagtcaattcggtaccggggtgttatctgcgatcggtgcggggtg
gaggtaacgcatttcaaggttcgcagggagcgcatggggcatattgagcttgcaacgcct
gtttctcatatttggtactaccgttgtgtaccaagtagaatgggtttgttactcgatcta
caggtgatcgcactgcgttctgttttgtactatgagaagtacatagttatagagccgggc
gacaccgatttaaaaaagaatcagttgctcactgaaactgagtacaatgacgcgcaggag
cgctacggtggcggctttacggcgggaatgggagcggaggctatccgtacccttttgcaa
aaccttgaccttgacgcgcttgttgcacagttgcgtgagaagatgatggagaagggtgcg
aaaagcgacaaacgcttgctgcgtcgcatagagatcgtagaaaactttcgggtgtcggga
aataagccggaatggatgattttgagcgttatcccggtgatcccgcctgatttgcgtcct
atggtgcagctcgacggagggcgttttgctacctcagatctcaatgacctgtatcggcgt
gtgatccaccgcaatagccgtttgattcggctcatggaactgaaggcgccggatatcatc
attcggaacgaaaagcgcatgttgcaagaggcagtggacgcgctttttgataattctaag
cgcaagcccgcgattaaaggtgcgtcaaaccggccgcttaagtctatttctgacatgctc
aaggggaagcaagggcgttttcgccagaatcttttgggcaagcgggtcgactattccggg
cgttcggttatcgtagtggggcctgaacttaagttgtggcagtgcgggttgcctacaaaa
atggcgcttgagctgtttaagccctttattatgaaaaagctggttgagaaagaaattgtc
tcgaacatcaaaaaggcaaagatgctcgtggaacaagagtcgccgaaggtattttcggtg
ttggatgaagtggtaaaagagcatccagttatgcttaatcgggcgccgacattgcatcga
ttgggcattcaggcttttgagccggtgttggtggaggggaaggcgattcgtcttcatccg
cttgtgtgtaaaccttttaatgctgattttgatggggatcaaatggcggtgcatgtgccg
ctgacgcaggcggcacagatggagtgttggacgctcatgttgtcgaatcgcaatttgctt
gaccctgcaaatgggcgcacgattgtgtatccatctcaggacatggttctgggtttgtat
tatctgacaaaggaacgctctctgccggagggtgctcgtcctcgccgtttttcctcggtg
gaggaggtaatgatggctgcggaaaagggggtaatcggctggcaggatcagattcaagtg
cgatatcacaaatgtgatggtcagcttgtggtcactaccgcaggaagacttgtgttgaat
gaggaagttcccgcagagattccttttgtcaacgaaacgcttgatgacaaacgcatcagg
aaattaattgagcgggtgttcaagcgtcaggattcttggcttgcggtgcagatgctcgat
gcactgaaaactatcggttatacctacgcgaccttctttggtgcaacgctcagtatggac
gacatcatcgtgcctgagcagaaggtgcagatgctcgaaaaggcgaacaaggaagtgcta
gcgattgcgagtcaataccgcggggggcacatcacgcaagaggagcgttataatcgcgtc
gttgaggtgtggtctaaaacaagtgaggagctcacttcgctcatgatggaaacacttgag
cgcgacaaggatggatttaataccatttacatgatggctacctcaggtgcgcgcgggagt
cgcaatcaaatccgccaactggcgggaatgcgtggcttaatggcaaagccgagtggggat
atcatcgaattgcctattcgttctaattttaaagagggactcaatgtcattgagtttttt
atttctaccaacggtgcacgcaaagggctcgcagacactgcgctaaagaccgctgatgcg
gggtatttgacacgtcgtctggttgatatcgcgcaagatgtggtggtgaacgaggaggac
tgtggtaccatcaatggcattgaatatcgcgcggtgaagtccggcgatgagattattgaa
tcgcttgctgagcgcatcgtaggaaagtatacacttgaacgtgtagaacaccccatcacc
catgaactgctgctcgatgtgaacgaatacatcgacgatgagcgtgcagaaaaggtggaa
gaagcgggcgtggagtcagtgaagttgcgcaccgtgctcacgtgcgaatctaagcgagga
gtgtgtgtgtgctgctacgggcggaatcttgcacgcaacaaaattgtagaaattggggag
gcggttgggattgtagccgctcagtccattggtcagccgggtacgcagctgacaatgcgc
acgttccatgttgggggtacggcaagcagtactacggaagagaaccgcatcacgtttaag
tatcccatactggtaaagagtattgagggggtgcatgtgaaaatggaggatggctctcag
ctgttcacgcgtcgggggacgctcttttttcacaaaactctggcagagtatcagcttcaa
gagggtgacagcgtgcaggtgcgtgaccgcgcgcgggtgctaaaggatgaggttctctac
cacaccaccgatgggcagacggtgtacgcttcggtgagtggttttgcgcgtataatcgat
cgaaccgtgtacctggtagggcctgagcaaaagacggaaattcgcaatggttctaatgta
gtaatcaaggcagacgagtatgtgccgcccggaaagaccgtggctacgtttgatccgttc
actgaacctattttggcagagcaggatggctttgtgcggtacgaagatattattttgggc
tctacgctcatcgaagaggtaaatactgaaacggggatggtggagcgcaggattacgacg
ttgaaaacaggaatacagcttcaaccgcgggtattcatctctgatgagtcggggaatgcg
ctgggttcgtactacttgccagaggaagcgcgcttgatggttgaagaaggcgcgcaggtg
aaggcgggtacggtcattgtaaaactggcaaaagcaattcaaaagacatcggatattacg
ggggggctgccgcgtgtttctgaattatttgaagcgcggcgccctaagaatgcggctgtc
ttggcacagatttctggggttgtgtcgttcaaaggactgtttaagggtaagcgtattgtc
gtggtgcgtgaccattacgggaaggaatataagcacctcgtgtccatgtcgcgtcagctt
ttagtacgtgatggagatacggttgaggcaggcgaacgcttgtgtgatggttgctttgat
ccccatgatatcctggcaattctgggtgaaaatgctttgcaaaactatttgatgaatgag
atccgtgacgtgtatcgtgtgcagggtgtttcaatcaatgaccagcacattggtttagtg
gtgcggcaaatgctacgaaagacagaggttgtctcggttggggacacgcgttttatctac
gggcaacaggtggataagtaccgttttcacgaagagaaccgtcgggttgaagcggaaggg
gggcagcctgcggttgcgcgcccaatgttccagggtataacgaaggcggcgttgaacata
gactctttcatatctgcggcatctttccaagaaacgaacaaggtgctcaccaatgcggcg
attgcaggctctgttgatgacttgtgtgggttgaaggagaacgtcattatagggcactta
attcccgcaggtacggggatgcggcgttatcgtcaggtgaagctgtttgacaagaacaag
cgggatcttgatgtgcagatggaggaagttatcaggcgtagaaaacttgaagaggaggcg
cttgcccaggcagttgcgggtatggaaggggaacctgaaggcgaagcgtga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (9)   
   Pfam (8)   
   PROSITE (1)   
All databases (23)

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