KEGG T.pallidum: TP0669

Treponema pallidum subsp. pallidum Nichols: TP0669

Entry

TP0669 CDS T.pallidum

Gene name dnaE

Definition DNA polymerase III subunit alpha (EC:2.7.7.7)

Orthology K02337 DNA polymerase III subunit alpha [EC:2.7.7.7]

Pathway tpa00230 Purine metabolism
tpa00240 Pyrimidine metabolism
tpa01100 Metabolic pathways
tpa03030 DNA replication
tpa03430 Mismatch repair
tpa03440 Homologous recombination

Class Metabolism; Nucleotide Metabolism; Purine metabolism [PATH:tpa00230]
Metabolism; Nucleotide Metabolism; Pyrimidine metabolism
[PATH:tpa00240]
Genetic Information Processing; Replication and Repair; DNA
replication [PATH:tpa03030]
Genetic Information Processing; Replication and Repair; Mismatch
repair [PATH:tpa03430]
Genetic Information Processing; Replication and Repair; Homologous
recombination [PATH:tpa03440]
Genetic Information Processing; Replication and Repair; DNA repair
and recombination proteins

SSDB

Motif Pfam: DNA_pol3_alpha PHP tRNA_anti

Other DBs NCBI-GI: 15639656
NCBI-GeneID: 2611537
UniProt: O83675

Position complement(730608..734120)

AA seq 1170 aa
MARMSFVHLHVHSNYSLLDGASSLQRLVRTAKSLGQEALALTDHGNMFGALHFQKVCSAE
GIKAIIGCELYVAPESRFDRSEHTIGRRYYHLIVLAKNETGYRNLMVLSSKAYIEGMYYK
PRVDDELLAQHAEGLICLSSCLAGQLPYLLLQGRKREAEEHARKYRALFGVDNYFIEVQD
HGLDEEKKVAPLLIELACRLGIPLVVTNDVHYAEQEDSVAQDILLCIGTKKNRSDPNRLK
FKTDEFYLKSSEKMAQLFPHYPEMVLNTVRIAQRCNVRIPQPGPLLPLYQIPHEFSSKEH
YIRHLVHRGLYDRYAVVSEEIKARADYELDVIVRMDFVGYFLIVWDFITWAKEHDIPVGP
GRGSGASSIVAYALKITDIDPLRYKLLFERFMNPERISMPDFDIDFCFERRQEVIEYVRA
RYGNDNVGQIITFGTLKPKAAIRDVGRVLDIPLSEVLMITKLMPDDPKLTFKKAYESEQL
AQMKQEPRYAELFQIAEKLEDTNRNTSLHAAGIVIGKTALTDYVPLYKDSKTGKISTQFG
MDLIEDCGLVKMDFLGLKTLTLIQRTQNLVRRKGGKYTTFSISDISDQDPTTFSMLAEGK
SAAVFQFESRGMQGILKRAKPSKMEDLIALNALYRPGPMAFIDQYIESKRDPGKIKYPDP
CLEDILSETYGVIVYQEQVMQVAQRIAGFSLGEADILRRAMGKKKLAVMQEKKKEFAERA
EKQGFDKKHAENIFEILIPFAGYGFNKSHATAYSVVAYQTAFLKANFPAEFMAANLSNEI
NSAEKLPLYMAEAEKMGLSIQKPDVNASEPYFSVCEGCIVYGLLGIKGLGEQVAFDVFDE
RIRNGPYTSFVEVLDRVPATSLNKKNAEIMIKAGCFDRFGVTRASLTAHLDDAMKYVARK
KAVTSSRQASLFDETDLGECSEYTFPVMEEWSQRERLRIEKELMGYYISGHPLDEYRSVI
GEKATLDLGHIENARSENKYLIVGVLNAIHPYTTKSGKNMAFGSFEDLHGSVDIVVFPVL
WEEHRAQFLPETIMGLVGTVDFSKETPAFLVDSVIDLEQLRFAQVKTILAGSEHRRVSSG
EKTPLQKRGVSQEVHIEVSSHVRAHAQFKSLYEILSAHTGGSGEVFLHMHVDDRTYVVYV
PSCKVSATEVFAQQLKGNESFVQILKECVQ

NT seq 3513 nt +upstreamnt +downstreamnt
atggcgcgcatgtcttttgttcatttgcatgttcactcaaattattcactgttggatgga
gcttcttcattgcagcggctagtgcgtactgcaaagtcgctgggacaagaagcgcttgcg
cttaccgaccatgggaatatgtttggtgcgttgcattttcaaaaagtttgttctgctgag
ggtatcaaagcgattatcggatgtgagctctacgtggcacccgaaagtcgctttgatcgc
agtgagcatactatcggtcgcagatactatcacctcatcgtgcttgctaagaatgagacg
ggatatcgaaatctaatggttctatcctccaaagcctatatcgagggtatgtactacaaa
ccacgtgtggatgacgagcttctggcccagcatgcagaagggctcatttgtctttcttct
tgtcttgccggacagcttccttatctgttattgcagggcagaaaaagggaggcagaagaa
cacgcgcgcaaataccgagcgctcttcggtgtagataattactttattgaggtgcaagat
catggacttgatgaagagaagaaagtagcaccgcttttgattgagcttgcatgtaggctc
ggcattccgttggtggttacaaacgacgtgcattatgcggagcaggaagactctgttgca
caagacattctgctgtgcattggaacgaagaagaatcgctccgatcccaatcggcttaaa
tttaaaacagacgagttctatttaaagtcttctgaaaaaatggctcagctgtttccccac
tatcctgaaatggtgctgaatacggtgcgcattgcacagagatgtaatgtgcggattcct
cagcctggcccgctgcttccgctctaccagattcctcatgagttttccagcaaggaacac
tatattcgccatctggtccatcgaggtttgtatgatcgctatgcagtagtgagcgaagaa
attaaggcgcgtgctgattatgaactagatgttatcgtgaggatggattttgttggctac
tttttgatcgtgtgggattttattacgtgggcaaaggagcatgatattcctgttggtccg
gggcgggggtctggagcaagttctattgttgcatatgcgttaaaaattaccgacatcgat
ccccttagatataagttgctttttgaaagatttatgaatcctgagcgtatttctatgccc
gattttgacatcgacttttgttttgagcgcagacaagaagtgattgagtatgtgcgtgcg
agatatggaaatgacaatgttgggcaaattattacgttcggaacacttaagccaaaggcg
gcgattcgtgatgtagggcgcgtgttggatattccgctttcggaagttttgatgattaca
aaactgatgcctgatgatccaaaactgacttttaaaaaagcgtatgaatctgaacaatta
gcgcaaatgaagcaggagccgcgctatgctgaattgtttcaaatagcagaaaagcttgaa
gacaccaatcgaaacactagtttgcatgcagcaggtatcgttattggtaaaacggcgctc
actgattatgtaccgctctacaaggattctaagacgggaaaaattagtacccagtttggt
atggatttaattgaagactgtggattagtgaagatggactttcttgggctaaaaacactt
acgctcatccaacggacgcagaatctcgtacgacgtaaagggggtaagtacacaacgttt
tcgatatcggatatcagtgatcaggatcctacgactttttctatgttggcggaaggaaaa
tctgctgcagtgtttcagtttgaaagtcgcggtatgcaaggcatcctcaagcgtgcaaag
cccagtaagatggaggatctaatagcgttgaatgcattgtaccgacctgggccgatggca
ttcattgatcaatatattgaatcgaaacgtgatcctgggaaaataaaataccctgatccg
tgtttggaagacatcctttcagaaacatatggggtaatagtataccaagagcaggttatg
caggtggcacagcgcattgcaggtttctcgctgggagaagcagatattctgcgccgtgcg
atgggaaagaaaaagcttgcagtgatgcaggaaaagaaaaaggagtttgctgagcgtgca
gagaaacagggttttgataaaaagcatgctgagaatatttttgaaattcttattcctttt
gcagggtatgggtttaataaaagtcacgccactgcatattcagtggttgcctatcaaact
gcatttctaaaagcaaattttcccgccgagtttatggctgcgaacctttcaaacgaaatt
aattctgcagaaaaattaccactctacatggctgaagcagaaaagatgggtctgtccatt
cagaaaccggatgtcaatgcttctgaaccttattttagtgtttgtgaagggtgcattgtg
tatgggttgttgggtattaaaggtttgggtgagcaggttgcgtttgacgtttttgatgag
cgtattcgcaacggtccttacacctcctttgtagaggtgctggatcgagttcctgcaacc
tcgttaaataaaaaaaatgccgaaataatgattaaggctggatgttttgaccggttcggg
gtaactcgcgcaagtcttacagcgcacctcgacgatgcaatgaaatatgttgcgcgaaaa
aaggcggttacaagttctagacaagcaagcctttttgacgaaacggatttaggagaatgt
tctgaatacacctttccggttatggaagaatggtcccagagggagagactccgtatagag
aaggaactgatggggtattatatttctggtcatcctcttgatgaatatcgaagtgtgata
ggagaaaaggcgacattggatttaggacatattgaaaatgctcgttctgaaaataaatac
ctgattgtgggagtgctgaatgctattcacccgtatacaactaagtcaggaaagaatatg
gcttttggctcttttgaggatctccatggctctgtagacatagttgtgtttcctgtgctg
tgggaggagcatcgcgcgcagttcttgccagaaactattatggggttggtgggaactgta
gacttttctaaagaaaccccggcgttcttggtagattctgtcattgacttggaacaatta
cggtttgctcaggttaaaactattctggctggatcggagcataggcgtgtatcgtcagga
gagaaaactccactgcagaaacgtggcgtttcgcaggaagtgcacatcgaggtgagttct
cacgttcgtgcgcatgcacagtttaaatcgttgtatgagattttgagtgcacatacagga
ggctcgggtgaagtgtttcttcacatgcatgtggatgaccgtacgtacgtggtgtacgtt
ccttcgtgtaaggtatctgccactgaggtatttgcgcagcaattaaaaggtaatgagagt
tttgtccaaattctaaaggagtgcgtgcaatga

All links

Pathway (6)   
   KEGG PATHWAY (6)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (19)

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