KEGG T.pallidum: TP0886

Treponema pallidum subsp. pallidum Nichols: TP0886

Entry

TP0886 CDS T.pallidum

Definition polynucleotide phosphorylase/polyadenylase

Orthology K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]

Pathway tpa00230 Purine metabolism
tpa00240 Pyrimidine metabolism
tpa03018 RNA degradation

Class Metabolism; Nucleotide Metabolism; Purine metabolism [PATH:tpa00230]
Metabolism; Nucleotide Metabolism; Pyrimidine metabolism
[PATH:tpa00240]
Genetic Information Processing; Folding, Sorting and Degradation;
RNA degradation [PATH:tpa03018]

SSDB

Motif Pfam: RNase_PH RNase_PH_C PNPase S1 KH_1 KH_2
PROSITE: KH_TYPE_1 S1

Other DBs NCBI-GI: 15639871
NCBI-GeneID: 2611780
UniProt: O83856

Position complement(962942..965050)

AA seq 702 aa
MKHSITGTIGDHPLLLESGYLARQANGSVYLQCEGTAILATVCSSAQRQEGLDYVPLTVD
FNEKYYAVGKMPGGFIKREGRPKDREILISRLIDRPMRPLFEKEFGRDIHVVPTCISSDM
VHPHDVLAIVASSAAVTLSDIPFHGPVAAVRVAYLNGSYVINPTFSQIDAASMEVVVAGT
RQGITMVEGGAREVSEDLMLGALEQAQEHIKALCDMQERLRGLCGKEKQTVIPSSAQLVG
RDRIYELAYPRLAQALYAQGKGERRSACDAVKRDVAQQYAAQLENDVQRRLFDALFHEME
YEILRLNILDRGLRIDGRAIDAIRPIACEVGVLPRPHGSAVFTRGETQSLAVVTLGAMSD
GQVYDDIEGDRRENFILHYNFPPFSVGEIGRMGVGRREIGHGCLAHRSLSAVIPDPEQFP
YTVRVVSEILESNGSSSMATVCSGTLSLLHAGVPIKKPVAGIAMGLITDGVRYAILSDIL
GEEDHLGDMDFKVAGTCDGITGFQMDVKVEAVSASLMKEALQQARVGRLHILSVMNQTIS
APSVHISRYAPHIESFKIAVEKIGALIGPGGKTVKSLSDQYRVTINTDSDGTVTVSGRDA
QSVFDAKVAVVGLTEDPRVGRVYQGVVKRIVEFGAFVEIFPGKEGLCHVSKLSRSRVSKV
SDVLQEGQRICVKLIDIDRMGRLNLSYIDALEGKSGGLDTTK

NT seq 2109 nt +upstreamnt +downstreamnt
atgaaacacagcataaccggcactattggggaccacccccttctccttgaaagtgggtat
ctggcgcggcaagcgaacgggtccgtgtatttacagtgtgaaggtacggcgattctcgcg
accgtatgctcctctgctcagcgacaggaagggctcgactatgtcccgctcactgttgac
ttcaacgaaaagtattatgcggtggggaagatgcctggcggcttcatcaagcgtgaaggc
cgtccgaaagacagagagattctcatttcgcgcctcattgatcgtccgatgcggccgctc
tttgaaaaggagtttggacgtgatatacacgttgtccctacgtgcatatcgtcggatatg
gtccatcctcatgacgtcttggctattgttgccagttcagctgccgttactctttcggat
atccccttccatggaccggttgctgcagtccgcgttgcatatctgaacggttcctatgtt
attaatcctaccttttctcagattgatgccgccagtatggaggttgtcgttgcaggcact
aggcagggcattaccatggtggaaggtggtgcgcgagaggtgtccgaggacctcatgctc
ggcgcgctcgaacaggcacaagagcatattaaagccctttgcgatatgcaggagcgtctg
cgtggactgtgtggcaaggagaaacagacggttatcccttcttctgcgcagcttgtaggt
cgcgatcgtatttatgagctcgcctatccgcgtcttgcgcaggctttgtatgcacagggg
aagggtgagcggcgcagtgcctgcgacgcggtgaagcgtgatgttgcacagcagtatgct
gctcagcttgagaacgatgtgcagcgcaggttgttcgacgcgttgttccacgagatggag
tatgagatactacggctgaacattcttgacaggggtttgcgcatcgatggccgtgccatt
gatgccattcggcccatcgcctgtgaggtcggggtgttgccgcgtccgcatgggtctgcg
gtgtttacccggggggagactcaatcgctcgcggtggtcacgctcggtgctatgtcggac
gggcaagtgtacgacgacatcgaaggggatagacgggagaattttatccttcactataat
tttcctcctttttcagtgggggaaatagggagaatgggggttggtcggagggagattggg
cacgggtgtctagcgcatcgttccctctcggcagtcattccggatccagaacagtttcct
tacaccgtgcgtgtggtttcagaaattttggagtcgaatggatcttcctccatggcgact
gtgtgctcagggacgctttctcttctccatgcaggggtcccaatcaaaaagcctgttgcg
ggaatcgcgatggggctcatcaccgatggcgtgcgatatgcgattctttcggatattttg
ggtgaggaggaccatctcggtgatatggatttcaaggtagcaggtacgtgtgacggcatt
accggttttcagatggatgtgaaggtagaggcggtgtctgcgtctctgatgaaggaggct
ttgcagcaagctcgtgtaggtaggctccatattctttctgtcatgaatcagacaatcagc
gcaccgagcgtgcacatttctcgctatgcgccgcatattgagagttttaaaatagcggtt
gaaaaaatcggcgcgctcatcggtcctggggggaaaaccgttaagtcgctttctgaccag
tatcgggtgactatcaacactgatagtgacggtaccgtaaccgtctccggaagggatgcg
cagtccgttttcgacgcaaaggtcgccgtggtgggccttactgaagatcctcgggtaggg
agggtgtatcagggtgtagtgaaacgaatcgtagagttcggtgcttttgtggagatcttt
ccagggaaggaaggactctgccacgtttcaaagctgtcgcgcagccgcgtgtccaaagtc
agcgatgtgctgcaagagggtcagcggatatgtgtgaagttgattgatatcgacaggatg
ggtcgtttgaatctttcctatatcgatgctcttgaggggaagtctggaggtctggacacg
acgaaatga

All links

Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (3)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (4)   
   GenBank (2)   
   EMBL (2)   
Protein domain (8)   
   Pfam (6)   
   PROSITE (2)   
All databases (24)

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