KEGG T00446: Tpen

Thermofilum pendens: Tpen_0427

Entry

Tpen_0427 CDS T00446

Definition

DNA ligase I, ATP-dependent Dnl1 (EC:6.5.1.1)

Orthology

K10747

DNA ligase 1 [EC:6.5.1.1]

Organism

tpe Thermofilum pendens

Pathway

tpe03030	DNA replication
tpe03410	Base excision repair
tpe03420	Nucleotide excision repair
tpe03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; DNA replication [PATH:tpe03030]
Genetic Information Processing; Replication and repair; Base excision repair [PATH:tpe03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:tpe03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:tpe03430]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

387754..389349

AA seq 531 aa
MALFRELVEAAEAAGRVSGRKEKVRILSEFLGRLSPEEASIAARFLAGHVFPEYDNRELG
VGYSLVREALKVLDQKPLFLVEPQPPAITEVYRLLERIAGVSGEGSREKKLKLLEGLFSR
LSRKEVEYLLRILFGEVRIGASTGLLLEAISRLSGVPYGDVLHAYMVLSDVGDVAFKALE
SPAALGKVDVSLFHPVKPMLADMAYNVDELFQEHGSPLHLEYKYDGLRVQIHMGRGKVRV
FSRRLSDITEYVPDVVERAVEGLHVEEAVVDGEAVAVIGGAPVPFQELLRRVRRKNERED
FLKSLPFELHLFDVIYLNGKSLVREPYSTRSRLLREIVVSEEILAKKTVAYTRQEALEFY
ESAVRSGNEGVMSKRHSSVYKPGIRGSDWLKLKSFDTIDCVIIAAEWGHGRRSGWLSDYH
LGVYDEESGRFLSVGKTFKGLSDAEFEEMTKRLLQLKVREEGYVVYVKPEIVVEVDYSEI
QRSKRYPSGFALRFARIRRIRFDKSPYEVTTLRELRERYLRSIRAKRWSPQ

NT seq 1596 nt +upstreamnt +downstreamnt
gtggcgctcttccgagagctcgtcgaagccgccgaagccgctgggagggtttccggcaga
aaggagaaagtacgcattctctcagagttccttgggaggctttccccggaggaggcttcc
attgcggctaggttcctcgcggggcacgtcttccctgaatacgataaccgagaactgggc
gtcggctactcacttgtaagagaagcgctaaaggttctcgatcaaaagcctctttttctc
gtagaacctcaaccacccgcgatcaccgaggtttaccggctactcgagcggattgccggc
gtgagcggtgagggtagcagggaaaagaagctgaagcttcttgaggggctattctcgagg
ttaagcaggaaagaggttgagtacttgcttcgcatactgttcggggaggttaggataggt
gccagcacagggctactcctagaagccatatctaggctatcgggtgtgccgtacggagac
gtgcttcacgcatacatggtgctgagcgacgtgggggacgtcgccttcaaagcactggaa
tcgcctgccgcgcttggaaaggtggacgtatcgctgttccaccctgtcaagccgatgctt
gcagacatggcttacaatgtcgacgagctcttccaggagcatggtagccctctccacctc
gagtacaagtatgacgggctacgcgtacagattcacatggggagggggaaggtcagagtc
ttttcgaggcggctcagcgacataactgagtacgtcccagacgtcgtggagcgcgcggtg
gaggggctacacgtagaggaggcggttgttgacggagaagctgtagccgtaattggcggt
gccccagtccctttccaggagttgttgcgaagggttaggcggaagaacgagagggaagac
ttcctcaaaagcctccccttcgagctccacctcttcgacgtgatataccttaacggaaag
tcgctagtcagagagccttactctactaggagccggctactccgcgagatcgtcgtgtca
gaggaaatcctggcgaagaagaccgtggcgtatacacgccaggaagccttggagttctac
gagtccgctgtaaggagcggtaacgagggggtgatgtctaagcggcactcctcggtgtat
aaacccgggatacgtgggagcgactggctgaagttgaagtccttcgacaccatcgactgc
gtcattatagccgcggagtgggggcacggcaggaggagcgggtggctaagcgactaccac
cttggagtgtacgacgaggagagcgggaggttcctctctgtaggcaaaacgttcaaaggg
ctgagtgatgcggagttcgaagagatgacgaagcggctcttacagctgaaggttagggag
gagggttacgtcgtctacgtgaagcccgagatagtggtggaggtggattacagcgagatt
cagaggagtaagcggtacccctcggggttcgcattgagattcgcgcgcattaggcgtata
cgcttcgataagagcccctacgaggttacaaccttaagggagctcagggaaaggtacttg
cgctccatacgcgcgaagcggtggtctccgcagtga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-TPE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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