KEGG   Thermofilum pendens: Tpen_0580
Entry
Tpen_0580         CDS       T00446                                 
Name
(GenBank) ribosomal RNA-processing protein RRP42
  KO
K12589  exosome complex component RRP42
Organism
tpe  Thermofilum pendens
Pathway
tpe03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tpe00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Tpen_0580
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tpe03019]
    Tpen_0580
Messenger RNA biogenesis [BR:tpe03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     Tpen_0580
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     Tpen_0580
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-ProteinID: ABL77985
UniProt: A1RXQ5
Position
complement(532055..532873)
AA seq 272 aa
MAEARTFVPSVKKEVILASLAKGERLDGRKADQYREIRLEKGIIGKADGSARVFLGSTQV
IAGVKLAIGTPFPDAPNEGVQIVNAELSPVASPFFEPGPPGEEDIELARVVDRGFRSAKV
VDLAKLSIIPSAKCWTLYIDIYPLDHDGNLVDAAGLAALLALLDTKLPRTSVQENKIAVL
DEKDPLPINTLVVYVTVAKIGEYLVVDPTLEEELTADAKITFGITERGEICAIQKSGEGS
FRPDEVLRARDMALKASSTLFEAIKKAVEQKQ
NT seq 819 nt   +upstreamnt  +downstreamnt
gtggctgaggctcgaacattcgttccttccgtgaaaaaggaggttatactggcctccctt
gctaagggcgaaaggctcgacggtaggaaagcggaccagtacagggagataaggctcgag
aagggtattataggcaaagctgacggctcggcaagagtattcctcggctcaacccaggtg
attgccggagttaagctggctatagggaccccgtttcccgacgcaccgaacgagggagta
caaatagtcaacgccgagctgtctcccgtggcttccccgtttttcgaaccgggacccccc
ggagaggaggacattgaactggcgagagtcgtggacagagggtttaggagtgcgaaagtc
gtagacttggcaaagctctccataataccctccgcgaagtgctggactctctacatagac
atataccccctcgaccacgatggaaaccttgtagatgcagcaggacttgcagcgctactc
gccctactagacacaaagctcccccgaacctccgtccaggaaaataagatcgctgttctc
gacgagaaagaccccctacccatcaacacgctggtcgtctatgtaaccgttgccaagata
ggcgagtacctagtagtagacccaactctcgaagaggaactcacagccgacgcaaagata
accttcggcatcacggagagaggcgagatctgcgcaatacagaaaagcggagagggatcc
ttcaggccagacgaggttctccgagctcgagacatggcgttaaaggcttcgtcaaccctc
ttcgaggctataaagaaagcagtggagcaaaaacaataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (18)   

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