KEGG   Treponema pedis: TPE_0387
Entry
TPE_0387          CDS       T02803                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
tped  Treponema pedis
Pathway
tped03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tped00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TPE_0387
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tped03019]
    TPE_0387
   03400 DNA repair and recombination proteins [BR:tped03400]
    TPE_0387
Enzymes [BR:tped01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     TPE_0387
Messenger RNA biogenesis [BR:tped03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     TPE_0387
DNA repair and recombination proteins [BR:tped03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      TPE_0387
SSDB
Motif
Pfam: DEAD Helicase_C RecQ_Zn_bind Helicase_C_2 ResIII Glyco_tran_WecG
Other DBs
NCBI-ProteinID: AGT42883
UniProt: S5ZY18
Position
complement(398856..400547)
AA seq 563 aa
MNDNLNEKEYNLTAYKENIADTPEDMDCPYIYETDNPVYGTDGAEDVIAVCAANVFGIPS
LFPWQRLVIANILDAVHAAEAVIEITENKQKNRADIIAEITENKEEETLTDIYDEDGVMR
GRQIILLPTGAGKSLCFQVPALLLDGPTVIIYPLLALMSDQFRRMCEGGLEPVLFRGGQN
TEERKAQLARMEGTDGKPPAKLIIANPEVLLSGGLIERIAARKVSHLAIDEAHCVTEWGD
SFRPAYLQLTEIIKKLNPPAVTAFTATASPDVLKRISEILFEGRAHLVRGESDRPNIIYF
VKHCRIKMPALLEEVEKRKKPMVIFCSSRKSTEQTASYLRLYFNDENIRFYHAGLQREEK
TEVEQWFHIHNSAILVTTCAWGMGVDKKDVKTVIHKDPPPTAEAYIQEAGRGGRDGSIAE
AVLLWSNEDKKRISLMPEKQRLRASVLEEFAASGKCRREVLLKALGEERAVAKTKDDEVI
ACSGCDICFKTAIQYAEDEALFIDFIKRNKRIFNQTEAAAVFSKNLRFWKAGDVKRLSDE
LLSCGLIKKYKTFLWKDKLDTVK
NT seq 1692 nt   +upstreamnt  +downstreamnt
atgaatgataatttaaacgaaaaagagtataaccttacagcttacaaagagaacattgcc
gatacgcctgaagatatggactgcccctacatttatgaaacggataatccggtttacggt
acggacggagcggaagatgtaatagcggtatgcgctgcaaatgtattcggaattccttct
ttgtttccctggcaaagacttgtaattgcaaatattttggacgccgttcatgctgcggaa
gccgttatcgaaattacggaaaataaacaaaaaaatcgggctgatatcatagccgaaatt
accgaaaacaaagaagaagaaactttaaccgacatttacgatgaagacggagttatgcgg
ggaagacaaattattcttcttcccacaggcgcggggaagtccctttgctttcaagttccc
gccctgttacttgacggacctaccgtaattatttatccgcttttagccttaatgagcgac
cagttcaggcgtatgtgtgaaggcgggcttgagccggtacttttccgcggaggacaaaac
acggaagaaagaaaggctcagcttgcccgtatggaaggtacggacggaaagcctcccgca
aaacttataatagcaaatccggaggttcttttgtcgggaggattaatcgaaagaattgcg
gctcgtaaagtttcgcaccttgcaatagatgaagctcattgcgttaccgaatggggagac
agcttccgtcccgcttatttacagcttacggaaataatcaaaaaattaaaccctcctgcc
gtaacggcttttaccgcaaccgcaagccccgacgttttaaaaagaatttccgaaattctt
tttgaaggaagggctcacttggtcagaggggaatcggaccgcccgaatataatttatttt
gtaaaacattgcagaataaaaatgcccgcccttttggaagaagtcgaaaaaagaaaaaag
cctatggttattttttgttcgagccgtaaaagtacggagcaaacggcctcatatttacgc
ctttattttaacgatgaaaatatacgcttttaccacgcaggtttacagcgcgaagaaaaa
accgaagttgaacaatggtttcatatacacaattccgcaatcttagtaactacctgtgct
tggggaatgggagtggataaaaaagacgtaaaaaccgtaatacataaagacccgccgccg
actgcggaagcctatattcaagaagcgggacgcggcggaagggacggcagtattgccgaa
gcggttttactgtggtcgaatgaagataaaaagagaataagtttaatgccggaaaaacaa
agactccgcgcaagtgtactcgaagaatttgcggcaagcggaaaatgccgccgcgaagtt
ttacttaaagctttgggagaagaaagagctgtcgccaagactaaagacgatgaagtaatt
gcatgttcgggttgtgatatttgttttaaaactgcaatacaatatgcggaagatgaagcc
ttatttatcgattttataaaaagaaataaaagaatttttaatcaaaccgaagctgcggcg
gttttttcaaaaaatttaagattttggaaagcaggagatgtaaagcgtctaagcgatgaa
cttttatcctgcggtttaattaaaaaatataaaacttttttatggaaggataaactggat
actgtaaaatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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