KEGG   Tetrapisispora phaffii: TPHA_0A03500
Entry
TPHA_0A03500      CDS       T02235                                 
Symbol
TPHA0A03500
Name
(RefSeq) hypothetical protein
  KO
K12580  CCR4-NOT transcription complex subunit 3
Organism
tpf  Tetrapisispora phaffii
Pathway
tpf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tpf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TPHA_0A03500 (TPHA0A03500)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tpf03019]
    TPHA_0A03500 (TPHA0A03500)
Messenger RNA biogenesis [BR:tpf03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     TPHA_0A03500 (TPHA0A03500)
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     TPHA_0A03500 (TPHA0A03500)
SSDB
Motif
Pfam: Not3 NOT2_3_5_C
Other DBs
NCBI-GeneID: 11532736
NCBI-ProteinID: XP_003683861
UniProt: G8BNE9
Position
1:complement(769721..771367)
AA seq 548 aa
MSQRKLQQEVDKLLKKVKEGLEEYDLIHDKFQASDPDNTSYREKLESDLKREIKKLQKHR
DQIKTWLSKEDIKDKVQQLTESRRLIEIDMEKFKTIEKLMKTKQFSTEALSNPDKFDINN
FNKEIVETEEFQFIKTCIEELQLQLEKNEMIKNDENIDSTECENKISRLEFHILNLENLL
KLLTNEEITKETINDFKEDIKYYVENNEDPDFIEYDTIYEDMGCEVKKETMEEVNNDGNL
ESTNTASSSVTNTPSKLKNVDRNAFPKKSKSSTTLLNDNISNDSTTKLVKKKETTLESNK
NKEDSDKVSNIKFPEDMTQKIDEIIAADMANYEAFNNPLFKDELKYLLNAKRKLMQPYAK
MPDTMIQQLESSLLNCPDSLDADTPIYYKKPLSLPHPTSVFFPNEPIRFVCPMDVQPQQR
LSAENTENSNKINENNADEDNIEVNDIYSRTSLAKIFRKFDLDTLFFIFYHYQGTYEQFL
VARELSKCRNWKYNKVDRNWYFKEVTKSAPDMAQTEEETWRYFDYQNSWLARRCNHDFQY
REEEFEKL
NT seq 1647 nt   +upstreamnt  +downstreamnt
atgtcgcaaagaaaattacaacaagaggtcgataaattgttaaagaaagttaaagaaggc
ttggaagagtatgacttgatacatgataagttccaagcgagtgatcctgacaatacttca
tatagagagaaattggaatcagatttaaaacgagagattaaaaaattacaaaaacataga
gatcaaattaagacatggttgagtaaagaagatattaaggataaagtgcaacaattgaca
gagagtagaagactgattgaaattgatatggagaaatttaaaactattgaaaaattgatg
aaaacaaaacaattttccactgaagctttaagtaatccagataagtttgatattaataat
ttcaataaagaaattgtagaaactgaggaatttcaatttattaaaacatgcattgaggaa
ttacaacttcaattggagaaaaatgaaatgattaagaatgatgaaaatatagattctact
gaatgtgaaaataaaatttcaagattagaatttcatatattaaatttagaaaatctttta
aaattattaacaaatgaagaaataactaaagaaactattaatgatttcaaagaagatata
aaatactacgttgagaacaatgaagatccagatttcattgaatatgataccatttatgaa
gatatgggttgtgaagttaagaaagaaacaatggaggaagttaacaatgatggtaacctt
gagtcaaccaatacagcatcctcgagtgttacaaacactccttcaaagcttaaaaatgtc
gatagaaatgctttcccaaagaaatcgaaatcatcaacaactttattaaatgacaatatc
agtaatgattcaacaacaaaattagtcaagaagaaggaaacaactttggaatcaaataaa
aataaagaagacagtgataaagtatcaaatattaaatttcccgaagatatgacacaaaag
attgatgaaattatcgcagcagatatggcaaattacgaagcattcaataatcctctattt
aaagatgaattgaaatatttattaaatgctaaaaggaagttaatgcaaccatatgcaaaa
atgccagatactatgatccaacaattggagtcatcactattgaattgtcctgattcattg
gatgcagacactccaatttattataagaaaccattgtctttgcctcatccaacatcagta
ttttttccaaatgaaccaattagatttgtgtgcccaatggacgtccaacctcagcaacgt
ttgagtgcagaaaatactgaaaattcaaataaaataaatgagaataatgctgatgaagat
aacatagaagtaaatgatatatattcaagaacttcattggctaaaatattcaggaaattc
gatctggacactttatttttcattttctatcattatcaaggtacttacgaacaattttta
gttgcaagagaattatcaaaatgtagaaattggaaatataataaagtggatagaaattgg
tattttaaagaagtcactaaatctgcaccagatatggcacagactgaagaagaaacatgg
aggtatttcgattaccaaaatagttggttagcaagacgttgtaatcatgattttcaatat
agggaggaagaatttgaaaaattataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (13)   

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