KEGG   Tetrapisispora phaffii: TPHA_0D02030
Entry
TPHA_0D02030      CDS       T02235                                 
Symbol
TPHA0D02030
Name
(RefSeq) hypothetical protein
  KO
K03679  exosome complex component RRP4
Organism
tpf  Tetrapisispora phaffii
Pathway
tpf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tpf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TPHA_0D02030 (TPHA0D02030)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tpf03019]
    TPHA_0D02030 (TPHA0D02030)
Messenger RNA biogenesis [BR:tpf03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     TPHA_0D02030 (TPHA0D02030)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     TPHA_0D02030 (TPHA0D02030)
SSDB
Motif
Pfam: RRP4_S1 ECR1_N KH_6 RRP40_S1 DUF6527
Other DBs
NCBI-GeneID: 11531006
NCBI-ProteinID: XP_003685275
UniProt: G8BSM0
Position
4:complement(417956..419053)
AA seq 365 aa
MSDVISVIKRQSGLKYASIDNDEMENFSSDEDVPMVDIDGKSNGGKRNEAAAGEIVTPGE
LITEDPIWMRGHGTYFLENSTYSSAAGTISRVNRLLSVIPLKGRYTPETGDHIVGRITDV
GNKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMRTFLKEGDVLNAEVQSLFQD
GSASLHTRSLKYGKLRDGLLIQVPSSLVVRSKNHTHNLPGNVTVLLGVNGFIWLRKTSKM
DVARETPSAGPASDISEGPTGAKSLNPTNSVSITRLEEESSWKIYSDKNDPSITPSIRQN
ISRYANVIKALAFCEIGLTHERIVIGYEASIAYSNIGELIEREVMESIGDDVINIEKMRG
NGATE
NT seq 1098 nt   +upstreamnt  +downstreamnt
atgtccgacgttattagcgtgattaaaagacagagtggtttaaaatatgcatccattgat
aatgatgaaatggaaaattttagttccgatgaggatgttccaatggtagatattgatggt
aagagcaatggtggaaaacgtaatgaagctgcagctggtgaaattgtcactcctggtgag
cttattacagaagatcccatttggatgagaggtcatggtacttattttcttgaaaattct
acttattcatcagcagcaggtacaatctcaagagtcaacaggttattatcagttattcca
ttgaaaggaagatacactccagaaactggtgaccatattgtgggaagaattactgatgta
ggtaataaaagatggaaagttgacattggtggtaaacaacacgcagtcttaatgttaggt
tctgtgaatctgccaggtggtatcttaagaagaaaatcggaaagtgatgagttacaaatg
agaacatttttgaaagaaggtgatgttttgaacgctgaggtacagtccctatttcaagac
ggtagtgcatcattgcatacaagatctttgaagtatggtaaactaagagatggcctatta
atccaggtcccaagctctctggttgtcagatctaaaaatcacacacataacttacctggt
aatgtgactgttttgttaggtgtcaatggatttatatggttaagaaaaacctctaaaatg
gatgttgctagagagacaccttcagcgggtccagctagtgacatttcagaaggtccaaca
ggcgctaagtcattgaacccaactaattcagtttctattacaagattagaagaagaatct
tcttggaaaatatattctgataaaaatgatccctcaattacaccgagcataaggcaaaat
atatctcgttacgccaatgttattaaagcgttggcattttgtgaaattggtttaacacat
gaaagaatcgtgatcggttatgaagcaagtatagcctattcaaacataggtgaacttata
gaaagagaagttatggagtccattggcgacgatgtgattaatatagaaaagatgagaggt
aacggtgctacagaatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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