KEGG   Tetrapisispora phaffii: TPHA_0M01900
Entry
TPHA_0M01900      CDS       T02235                                 
Symbol
TPHA0M01900
Name
(RefSeq) hypothetical protein
  KO
K12617  DNA topoisomerase 2-associated protein PAT1
Organism
tpf  Tetrapisispora phaffii
Pathway
tpf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tpf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TPHA_0M01900 (TPHA0M01900)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tpf03019]
    TPHA_0M01900 (TPHA0M01900)
Messenger RNA biogenesis [BR:tpf03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     TPHA_0M01900 (TPHA0M01900)
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     TPHA_0M01900 (TPHA0M01900)
SSDB
Motif
Pfam: PAT1
Other DBs
NCBI-GeneID: 11531830
NCBI-ProteinID: XP_003688199
UniProt: G8C0Q0
Position
13:complement(394557..397247)
AA seq 896 aa
MSFFGFNSKLPNEGNRQRHDHGKKDNNNSPLDFEDTYKGYGEYEREEDDYLNDETFGDDV
AFGTDFDFGHGSSSANSGMISTNQSQGQQGFNDPVGMQGAQAQQQQFQMHSSYAAAASTT
VPQQQAQMNVTMDMRPMESLWSNQPDMSTQVGQNEVLSMEELERQQIQMQQQQQHPPPQM
FMPNYPNQQPQQPQQQFQNNYQNNFQNNFQNPQNMNNQFQQPPPPQIFNQPPPPNQQQTQ
AQMNQAPVHMDSPGQFNPQHMHAMHAVPGGMPMPMQMNNQISNHLHHQQFDPSLELKNQN
QHRQQQVMGQNIGQNELLENDQALSTPSPKPTHQVLQREDGSIASNGNNNQSYIHIKDKG
PRRMSRRSEPLSSEEQKRLQIRHAKVEKILKNAGLMTPRDKDFITRYQLSQIVTEDPYNE
DFYFQVYKIIQTGGVAGKSNKDLIARAYLEHSGHRLGGRYKRADVALQRMQNQVEKAVTV
AKERPQKNKDNTDSAREGVLGKISSSLNSKAPRRQLQIPSPKLSDEEDESKLSSHASSES
LEEVTESLNNVGINQSSRSRRRSSYAFSSVDQISVLSRSGGRKFVLSLIETVYEEVLELE
AQLRSGNETDSTGLWESLHIGDEAYDVSPFISMLSFDKGVKIMPRIFNFLDKASKLKLLQ
TFFNELSHLNVIIISSFKTNPTPTEAQLKKIELFQGVFLKIIVSFLSSSADFIEIMGLLL
HLIRNNNVSFISTSTLGLNLITILISRAAIIKQDCNRTNSLSSPDIQAWNEIYDKLFISL
ETKLSLVFPPQEYRDTVVKETSQSGQLQQSNTQYFDQSYIWQFLASLALSGKLNHQRIII
DEVRDEIFGTINCAEQMKSLPDQSSAYRRDKLYQDLNLFLNVMGLVARDGEISELK
NT seq 2691 nt   +upstreamnt  +downstreamnt
atgtcgttttttgggttcaattctaaattgcccaacgaaggcaaccgtcagcgtcatgat
cacggtaagaaagacaacaacaattctcctttggattttgaggatacttacaaaggatat
ggcgaatacgaaagagaagaagatgactatttgaacgacgaaacttttggtgacgatgta
gcttttggtacagattttgatttcggtcatggaagttcaagcgctaactccggaatgatt
agtaccaatcagtctcaaggtcaacaaggcttcaacgatccagttggtatgcaaggcgct
caggctcagcaacaacaatttcagatgcatagctcttatgctgctgcagcttccaccact
gttcctcaacagcaggcccaaatgaatgtcaccatggatatgagaccaatggaatcgtta
tggtctaaccaaccggatatgtcgactcaagtaggtcaaaatgaagttttatctatggaa
gaattagaaagacagcaaatccaaatgcaacagcaacaacaacacccaccaccgcaaatg
tttatgccaaattatccaaaccaacagcctcaacaacctcaacaacaattccaaaataat
taccaaaacaatttccaaaataatttccaaaatcctcaaaacatgaataatcagtttcaa
cagccacctcctcctcagatctttaatcaaccacctcctccaaaccaacaacagacacag
gctcaaatgaatcaagcaccagttcatatggattccccaggacaattcaatcctcaacac
atgcacgcaatgcatgccgttccaggtggaatgccgatgccaatgcagatgaacaatcaa
atatctaaccaccttcatcaccaacaatttgatccttctttagaacttaaaaatcaaaac
caacatcgtcaacagcaagtaatgggtcaaaatattggacaaaatgaattgttagaaaac
gatcaagctttatctactccttctccaaagccaacccaccaagtattgcaaagagaagat
ggtagcatagcttccaatggcaataataatcaatcttatattcacattaaagataaaggt
cctcgtcgcatgtctagaagaagtgaacctttaagctcagaagagcaaaagaggttacaa
ataagacatgctaaagttgaaaaaatcttgaaaaatgcaggtttaatgactcctcgtgat
aaggactttatcacacgttatcaattgtcacagattgttaccgaagatccttacaatgaa
gacttttacttccaagtctataagattattcaaactggcggtgttgctggcaaatccaat
aaagatttgatcgctcgtgcctatttggaacattctggtcatagattaggtggtcgttat
aagagagctgatgtcgcattgcaaagaatgcaaaaccaagtagagaaagctgtcactgtt
gcaaaggaaagacctcaaaagaacaaggacaacactgactcggctcgtgaaggtgtctta
ggtaaaatctcatcgtctctaaacagcaaagctccacgtagacaattacaaattccatct
ccaaaactaagtgatgaagaagatgaatcgaagttgtcatcccacgcttcctcggagtca
ttagaagaagtcacagaatctttaaacaatgttggtatcaatcaatcatctagatcaaga
agaagatcgtcttatgcgttttcttcagttgatcaaatttctgttttatctcgttccggt
ggtagaaaatttgttttatctttgattgaaactgtttacgaagaagttctagaattagaa
gctcaattaagaagcggaaatgaaactgatagcaccggtttgtgggaatcattacatatt
ggtgacgaagcgtatgatgtttctccatttatttctatgttatctttcgacaaaggtgtg
aagataatgccacgtatttttaactttttggataaagcttcgaaactaaaattattacaa
acatttttcaacgaattatctcatttgaatgttattattattagttctttcaagaccaac
ccaactcctactgaggctcaattgaaaaaaattgaattattccaaggtgttttcctaaag
attattgtatcatttttatccagcagtgctgatttcattgaaatcatgggtctattatta
catctaatcagaaacaataatgtttcatttatctccacctctactcttggtttgaattta
attactattttgatttctcgtgctgctatcatcaagcaagactgcaacagaaccaacagt
ttatcttctccagatattcaagcatggaatgaaatttatgataaactatttatttcacta
gagactaaattatcattagtattcccaccacaagaatatagagatacagtggtgaaggaa
acttctcaatcaggacaattacagcagtccaacactcagtatttcgatcaatcatatatt
tggcaattcttagcatcattagcattgagtggtaaactaaatcatcaaagaattatcatc
gacgaagtaagagatgaaatattcggaaccattaattgtgcagaacaaatgaagagttta
cctgatcaaagctccgcttacagaagagataagttatatcaagatttgaacttattctta
aatgtaatgggtttggttgcaagagatggcgaaatttcagaattaaaataa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (12)   

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