KEGG   Tetrapisispora phaffii: TPHA_0P01550
Entry
TPHA_0P01550      CDS       T02235                                 
Symbol
TPHA0P01550
Name
(RefSeq) exosome complex component RRP40
  KO
K03681  exosome complex component RRP40
Organism
tpf  Tetrapisispora phaffii
Pathway
tpf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tpf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TPHA_0P01550 (TPHA0P01550)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tpf03019]
    TPHA_0P01550 (TPHA0P01550)
Messenger RNA biogenesis [BR:tpf03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     TPHA_0P01550 (TPHA0P01550)
SSDB
Motif
Pfam: RRP40_S1 KH_6 Rrp40_N RRP4_S1 E1_UFD
Other DBs
NCBI-GeneID: 11530869
NCBI-ProteinID: XP_003688747
UniProt: G8C2D5
Position
16:complement(317073..317786)
AA seq 237 aa
MSQFIVPGDDFQLDLTKETALGPGMYYDPKTQRVAVVAAGMLNVVETKRGQTVYVDYNTK
RYIPAVGDFVIGTITGAYGDRYKVSLSNFSNSVSLSYMAFPNASKKNRPTLKVGDLAYAR
ICSAEKELEAEIECMDSSTGVDSGFGSLENGMVIETKLPFARRLLFDNDFPLLQLLAKHT
KFEIAIGLNGVVWVKCAEVKNTLACYRSILDCQNAKIEQYKNIIKMHFEQLSNAIEE
NT seq 714 nt   +upstreamnt  +downstreamnt
atgtctcagttcattgttcctggtgatgatttccagctggatttgactaaggaaactgca
ttaggccctggtatgtactatgacccaaagactcaaagagttgcagttgtggctgcaggt
atgttaaacgtggtggaaacgaaaagaggacagacagtttatgttgattacaatactaaa
aggtatatccctgcagttggcgattttgttattggcacaattacaggagcttacggtgat
cgatataaagttagcttgtcaaatttttcaaacagtgtttcattatcttacatggcattt
ccaaacgcttctaagaagaatagaccaactttgaaagttggggacttggcttatgctcgt
atttgttcagctgagaaagaactagaggctgaaattgagtgtatggattcatccacaggt
gttgatagtggatttgggtcactagaaaacggtatggttatagagactaaactaccattt
gcacgtagattattatttgataatgattttccactattgcagctgcttgcaaagcataca
aaatttgaaatagctataggtctaaacggtgtagtatgggtaaagtgtgcagaagtgaag
aacactttggcatgttacagatctattttagattgtcaaaacgctaaaatagaacaatac
aaaaatattatcaaaatgcattttgagcaactttcaaatgctatagaagaataa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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