KEGG   Thermococcus piezophilus: A7C91_07905
Entry
A7C91_07905       CDS       T04941                                 
Name
(GenBank) RNA-binding protein
  KO
K07573  exosome complex component CSL4
Organism
tpie  Thermococcus piezophilus
Pathway
tpie03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tpie00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    A7C91_07905
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tpie03019]
    A7C91_07905
Messenger RNA biogenesis [BR:tpie03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     A7C91_07905
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     A7C91_07905
SSDB
Motif
Pfam: ECR1_N EXOSC1 S1 Auto_anti-p27 RRP4_S1 PCB_OB DZR_2 HVO_2753_ZBP DZR Zn_Tnp_IS1595 Trm112p TF_Zn_Ribbon TRAM OrfB_Zn_ribbon
Other DBs
NCBI-ProteinID: ANF23096
UniProt: A0A172WIF7
Position
1444822..1445409
AA seq 195 aa
MDEKKRVENGDLVLPGDYLGVIEEYFPGDGVKEENGELYAIRPGRVRIDPNKMEISIESV
TDTPPLPQIGDIVIAKVIEVKPQAAIVQLVRIEGRNEREIATSKLAGIHISQVREGYIES
MTNEFKIGDVIRARVIANEKSPIQLSTKGHDLGVVYALCTRCRAPLVRRGNQLVCPRCGH
VETRKLSSFYRKLKV
NT seq 588 nt   +upstreamnt  +downstreamnt
atggatgaaaagaaacgggtagaaaacggcgacctcgttctccctggagattatctcggc
gttatcgaggagtattttccgggtgatggtgttaaagaggagaacggggaactctacgcg
atcaggccaggaagagtcaggatagatccaaacaaaatggaaataagcatagaatcagtt
acggacacgcctccgcttccgcagataggagacatcgttatagccaaggtcatagaggtc
aagccccaagccgcgatagtccagctcgttagaatcgagggccggaacgagagggagatc
gccacatcgaagctggccggcatccacatctcccaggtcagggagggatacatcgagagc
atgaccaacgagttcaagattggagatgtaatcagggccagggtaatagccaacgagaag
agtccaatacagctctccacgaaaggccacgaccttggggtggtttacgcgctgtgcaca
cgctgtagggctccactcgtcagacgtgggaaccagctcgtctgcccaagatgcggccac
gtcgaaacaaggaagctctcctctttctacagaaagctgaaggtgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (14)   
   Pfam (14)   
All databases (22)   

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