KEGG   Treponema pallidum subsp. pallidum Mexico A: TPAMA_0380
Entry
TPAMA_0380        CDS       T02273                                 
Name
(GenBank) putative DNA repair helicase
  KO
K10843  DNA excision repair protein ERCC-3 [EC:5.6.2.4]
Organism
tpo  Treponema pallidum subsp. pallidum Mexico A
Pathway
tpo03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tpo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    TPAMA_0380
  09124 Replication and repair
   03420 Nucleotide excision repair
    TPAMA_0380
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tpo03021]
    TPAMA_0380
   03400 DNA repair and recombination proteins [BR:tpo03400]
    TPAMA_0380
Enzymes [BR:tpo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     TPAMA_0380
Transcription machinery [BR:tpo03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     TPAMA_0380
DNA repair and recombination proteins [BR:tpo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     TPAMA_0380
SSDB
Motif
Pfam: ERCC3_RAD25_C Helicase_C_3 ResIII Helicase_C DEAD AAA_22
Other DBs
NCBI-ProteinID: AFU66386
Position
complement(406445..408265)
AA seq 606 aa
MTSVPKPLIIQADRSILLDVHAPEAVAARKALVSFAELEKSPEHLHSYRLTPLSLWNAAS
AGFSPQMIAQTLTRFSRFTPPQTVLDWVVDIMSRYGKIRLREDTTHSTLLRLQVRDAHIA
REIAASKSLASHLSPTTACLQDGPLPTPDTARIAQPDTTPQVQGAQTGCSYDFLLPRLHR
GTVKQLLLRHGWPVHDEVPLREGTPLSLRLRISPASCPPPSTAYPCCHTPGTPSFVPRDY
QWEAADAFVGNRTQGSGFGVVVLPCGAGKTVVGLLVMGLLQTDTLILTPNSAAAQQWKRE
LCEKTDLDGTSIGIYSGECKEIRPVTIATYQILTWRAHADAPFSHFRLFMERSWGLIIYD
EVHLLPAPLFRITAELQVVRRLGLTATLVREDGCAQDVFSLVGPKRYDVPWKDLEARGWI
ARVRCVEVRVTMDRSLQYQYMTAPVRLRHRLASENEAKVAVVQRLLRAHAGAPTLIIGQY
VQQLLHLAHVLQVPLVSGRQTYAAREAIYQRFREGTLQVLVVSKVANCALDLPDASVAIQ
VSGTFGSRQEEAQRLGRLLRPKICDAHFYSLVTEQTVEEDCALRRQRFLVEQGYTYETLR
VSEVHE
NT seq 1821 nt   +upstreamnt  +downstreamnt
gtgacttctgtaccaaaaccgcttatcatccaagcagaccgctccattttacttgatgtg
cacgctcctgaggcggtagcagcacgcaaggcgctcgtttcctttgcagaactggaaaaa
tctccagagcatctacacagctaccgactcactcctctttctctgtggaacgccgcgagc
gcaggattcagcccccagatgattgcacaaacactgacgcgtttctcacgcttcactccc
ccgcaaacagtactcgactgggtagtggatatcatgagccgctatggcaaaattcgcctt
cgcgaggatacgacgcacagcaccctactgcgccttcaggtacgcgacgcacacatcgca
agagaaattgccgcctcaaaaagtcttgcatcgcacctttcccccacaaccgcttgcctg
caggacggtccgctgcccacaccggacactgcgcgcattgcccagccggatacgacacct
caggtgcagggtgcacagactggatgcagttacgactttctattgccacgcctccaccga
ggcaccgttaaacaattactcttgcgccacggatggccggtgcatgatgaagtgcctctc
cgcgagggaactcccctatccttgcgcttacgcatctctccggcttcgtgtcctcctcct
tctactgcgtatccgtgttgtcacacgccagggacaccctcgtttgtgccacgtgactac
cagtgggaagcagccgatgccttcgtcgggaatcgcacacaagggagcggatttggtgtg
gtagttttgccgtgtggcgcgggaaaaacggttgtcggtttactcgttatgggtctgttg
caaacggataccctgattctgactcctaatagcgcagctgcacagcaatggaaacgtgaa
ttgtgtgaaaaaaccgacctggacgggacatccatcggtatctattcaggagaatgcaag
gaaatcagaccagtgactatcgcaacctaccagatactcacctggcgtgcgcatgcagac
gctcccttttcccatttccgtctctttatggaacgcagttggggtttgattatttacgat
gaggtgcacttgctccctgcaccgcttttccgtatcaccgcagaacttcaggtggtacga
cgcttgggattaactgcaacgctcgtgcgagaagatggctgtgcgcaggatgtgttcagc
ctcgtaggaccgaagcggtatgacgtgccgtggaaggatttagaagcacgcggctggatc
gcacgggtgcggtgcgtagaagttcgggtaacgatggaccggtcactccagtaccagtac
atgacagctcctgtgcgcctgcgacatcgccttgccagcgagaacgaagcaaaagtagcg
gtggtacagcgtctattgcgcgcacatgcaggtgcgcctacactgattattgggcaatac
gtgcagcagttattacatctcgcacacgtactgcaggtgccactggtgagcggaagacaa
acttatgcggcgcgtgaagccatctatcagcgttttcgcgagggcacgctccaggtgctc
gttgtatcaaaggtggcaaattgtgcgcttgatcttcctgacgcgtcggttgcaattcaa
gtttccgggacatttggcagccgtcaggaggaggcgcaacgcctcggacgcctcttacgg
ccaaagatatgcgacgcccatttttactcgttagttacagaacaaacggtggaagaagac
tgtgcactgcgtcgccagcggtttttggtagagcagggttacacgtacgaaacccttcgc
gtaagcgaagtacacgaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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