KEGG T01228: Tpau

Tsukamurella paurometabola: Tpau_4039

Entry

Tpau_4039 CDS T01228

Definition

ATP dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

tpr Tsukamurella paurometabola

Pathway

tpr03410	Base excision repair
tpr03420	Nucleotide excision repair
tpr03430	Mismatch repair
tpr03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:tpr03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:tpr03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:tpr03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:tpr03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_C

Other DBs

NCBI-GI:

296141706

NCBI-GeneID:

9158223

UniProt:

D5UNB5

Position

complement(4169388..4170416)

AA seq 342 aa
MNPPLDPMLAKAAKTIPGSAGDAAYSHEPKWDGFRALIFRDGDEVFIGSRSGKDLGRYFP
EVVAAARAELPERCVLDGEIAVAVHREGRKRLDWESLSARIHPAQSRITKLAEETPAIFI
GFDAIAMAEVDLTGKPFSARRHVLVSAYAGTGTCKISRVTTDAAAAADWFERFEGAGLDG
VISKRIDGHYLPGKREMIKVKHARTAEAVVIGYRPHKSQPNAVGSVLLGLYQDDQLLPIG
GIGAFTAAKREEYLQLLEPMRTADSVQGEPNRWATPEKTGEWVPVRPELVVEFDYDQMEG
MRLRHTAKFKRWRPDRTPESCGYEQLDVPVNYDLDDVLQEGV

NT seq 1029 nt +upstreamnt +downstreamnt
gtgaacccgccgctcgatccgatgctcgccaaggccgccaagacgataccgggctcggcc
ggtgacgccgcgtactcgcacgagccgaagtgggacggcttccgcgccctcatcttccgc
gatggcgacgaggtgttcatcggctcgcgcagcggcaaagacctcggccgctacttcccc
gaggtggtcgccgccgcgcgggccgagcttcccgagcggtgtgtgctcgacggggagatc
gccgtcgccgtacaccgcgagggccgcaagcgcctcgattgggaatcgctctcggcccgc
atccaccccgcgcagtcccggatcaccaagctcgccgaggagaccccggccatcttcatc
ggcttcgacgcgatcgccatggccgaggtcgatctcaccggtaagccgttcagcgcgcgc
cgccacgtgctcgtctccgcgtatgccggtaccggtacgtgcaagatcagccgcgtcacc
accgacgccgccgcggccgccgactggttcgagcgattcgagggagcgggcctggacggg
gtgatctcgaagcgtatcgacgggcactacctgcccggcaagcgggagatgatcaaggtc
aagcacgcccgcaccgccgaggccgtggtgatcggttaccgcccgcacaaatcgcagccg
aacgccgtcggatcggtgctgctcggcctgtaccaggacgatcagctcctcccgatcggc
ggcatcggcgccttcaccgccgccaaacgcgaggagtacctgcaactcctcgaacccatg
cgcaccgccgactcggtccagggcgagcccaatcgctgggccacgccggagaagacgggg
gaatgggtgcccgtgcgccccgagctggtcgtcgaattcgactacgaccagatggaggga
atgcgcctgcggcacaccgccaaattcaagcgttggcgtcccgaccgcacgccggagagc
tgtggatacgagcagctcgacgtcccagtcaattacgacctcgacgatgtactccaggag
ggcgtgtaa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

Download RDF

DBGET integrated database retrieval system