KEGG   Thalassiosira pseudonana: THAPSDRAFT_24744Help
Entry
THAPSDRAFT_24744  CDS       T01078                                 

Definition
hypothetical protein
Orthology
K10563  
formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
tps  Thalassiosira pseudonana
Pathway
Base excision repair
Brite
KEGG Orthology (KO) [BR:tps00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    THAPSDRAFT_24744
Enzymes [BR:tps01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     THAPSDRAFT_24744
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     THAPSDRAFT_24744
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
JGI: 
UniProt: 
Position
13
AA seq 271 aa AA seqDB search
MPELPEVEKFRQILLPLTAAVTKSKVNSSSSSSACTITIACPSPTPPKVFPSQNDIDAIN
RGGYAVGDVLRKGKVLCIVLKKQTQSAAAERATKRRRTNGDTDSCNITGNEPTIYLSLHM
GMTGRISSPGNVPSLESLSECDEYPPPHTHMIIKSTESEACFSDPRRFGSASVFGVWCEG
GDLIPSFKDLAPDALESSAGYSCANDVSKMGRKIAEQLSNQRRGIKAVLLDQRAVVSGVG
NWVADEILYRSKLHPDQSFLNVQESQRVVGE
NT seq 816 nt NT seq  +upstreamnt  +downstreamnt
atgcctgagcttccagaggtggagaagtttcgtcagatcttgcttcctctaactgcagct
gtcacgaaatcaaaggtgaattcctcctcttcttcgtcggcatgcacaatcaccattgca
tgcccatccccaacgccacccaaagtatttccatcccaaaacgatatcgatgcgatcaac
agaggtggatacgccgtgggtgacgtgttacgtaagggaaaggtgttgtgcatcgtgttg
aagaagcaaactcaaagtgctgctgcagagagagctacaaagaggcgacgcacaaacgga
gacactgatagttgcaacatcaccggcaacgaaccaacaatctatctgtcacttcacatg
ggcatgacggggcggatatcatctcctggaaacgtgccaagtctcgaatcgttgagtgaa
tgtgatgaatatccacctcctcacacccacatgattatcaaatcgaccgaaagtgaggct
tgcttttcagatccgcgaagatttggatcggccagtgttttcggtgtgtggtgtgagggc
ggcgatttgattccatcattcaaagatctcgctcccgatgcactggaatcatcagctgga
tattcttgcgcaaatgatgtcagcaagatgggacgcaaaattgcagagcaactatcaaac
caacgtcgaggtatcaaggcagtgctacttgatcaacgtgcagtagtgagtggggtgggg
aactgggtggctgatgaaatactgtatcgttcaaagcttcatcccgatcaatctttcttg
aacgtgcaagagtctcaacgtgtagtaggtgagtga

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